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View Structure Prediction Details

Protein: Rtnl1-PC
Organism: Drosophila melanogaster
Length: 202 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rtnl1-PC.

Description E-value Query
Range
Subject
Range
gi|109103031 - gi|109103031|ref|XP_001112090.1| PREDICTED: reticulon 4 [Macaca mulatta]
257.0 [0..1] [193..1144]
gi|56791762, gi|... - gi|56961618|ref|NP_989697.2| reticulon 4 [Gallus gallus], gi|56791762|gb|AAW30397.1| NOGO isoform A2...
256.0 [0..4] [193..876]
gi|40788974 - gi|40788974|dbj|BAA74909.2| KIAA0886 protein [Homo sapiens]
256.0 [0..1] [193..1041]
gi|49333549, gi|... - gi|72535156|ref|NP_001025138.2| reticulon 1a isoform 1 [Danio rerio], gi|49333549|gb|AAT64113.1| ret...
255.0 [0..5] [191..631]
RTN4_MOUSE - Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2
253.0 [0..5] [193..974]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRLLESLI YWRDVKKSGI VFGAGLITLA AISSFSVISV FAYLSLLTLF GTVAFRIYKS  60
   61 VTQAVQKTNE GHPFKDYLEL DLTLSHEKVQ NIAGVAVAHI NGFISELRRL FLVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.09691
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #2
Region A:
Residues: [115-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIIDSIKFGV ILWVFTYVGA WFNGMTLVIL AFVSLFTLPK VYENNKQSID THLDLVRSKL  60
   61 TEITDKIRVA IPIGNKKPEA AAESEKDK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle