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View Structure Prediction Details

Protein: Rtnl1-PJ, Rtnl1-...
Organism: Drosophila melanogaster
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rtnl1-PJ, Rtnl1-....

Description E-value Query
Range
Subject
Range
gi|56791762, gi|... - gi|56961618|ref|NP_989697.2| reticulon 4 [Gallus gallus], gi|56791762|gb|AAW30397.1| NOGO isoform A2...
267.0 [0..6] [225..851]
gi|109103031 - gi|109103031|ref|XP_001112090.1| PREDICTED: reticulon 4 [Macaca mulatta]
261.0 [0..22] [225..1133]
gi|40788974 - gi|40788974|dbj|BAA74909.2| KIAA0886 protein [Homo sapiens]
261.0 [0..22] [225..1030]
RTN4_MOUSE - Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2
259.0 [0..22] [225..959]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFGETGQN GVCKQRPLIC SILDPNAWFK PERLHPQVES LIYWRDVKKS GIVFGAGLIT  60
   61 LAAISSFSVI SVFAYLSLLT LFGTVAFRIY KSVTQAVQK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNEGHPFKDY LELDLTLSHE KVQNIAGVAV AHINGFISEL RRLFLVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #3
Region A:
Residues: [147-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIIDSIKFGV ILWVFTYVGA WFNGMTLVIL AFVSLFTLPK VYENNKQSID THLDLVRSKL  60
   61 TEITDKIRVA IPIGNKKPEA AAESEKDK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle