YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL24-PA
Organism:	Drosophila melanogaster
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL24-PA.

Description	E-value	Query Range	Subject Range
RM24_DROPS - Probable 39S ribosomal protein L24, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL2... RM24_DROPS - Probable 39S ribosomal protein L24, mitochondrial precursor - Drosophila pseudoobscura (Fruit fly)	307.0	[0..1]	[247..1]
gi\|58389458, gi\|... - gi\|58389458\|ref\|XP_317046.2\| AGAP008405-PA [Anopheles gambiae str. PEST], gi\|55237285\|gb\|EAA12224.2\|... AGAP008405-PA - mRpL24: 39S ribosomal protein L24, mitochondrial\|protein_coding\|3R:10362610:10363448:-1\|gene:AGAP008...	290.0	[0..1]	[247..1]
gi\|157131921, gi... - gi\|157131921\|ref\|XP_001655972.1\| mitochondrial ribosomal protein L24 [Aedes aegypti], gi\|108871351\|g...	271.0	[0..1]	[247..1]
gi\|91087083 - gi\|91087083\|ref\|XP_974948.1\| PREDICTED: similar to AGAP008405-PA [Tribolium castaneum]	243.0	[0..1]	[247..1]
CE11420 - status:Confirmed UniProt:P91353 protein_id:AAB37815.1	235.0	[0..16]	[247..22]
RM24_CAEBR - Probable 39S ribosomal protein L24, mitochondrial OS=Caenorhabditis briggsae GN=mrpl-24 PE=3 SV=1 gi\|157747279 - gi\|157747279\|ref\|XP_001668734.1\| Hypothetical protein CBG12482 [Caenorhabditis briggsae AF16]	233.0	[0..16]	[247..22]
RM24_MOUSE - 39S ribosomal protein L24, mitochondrial OS=Mus musculus GN=Mrpl24 PE=1 SV=1	224.0	[0..49]	[247..19]
RM24_RAT - 39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus GN=Mrpl24 PE=2 SV=1	223.0	[0..49]	[247..19]
gi\|114560324, gi... - gi\|114560326\|ref\|XP_001166859.1\| PREDICTED: mitochondrial ribosomal protein L24 isoform 3 [Pan trogl... MRPL24 - mitochondrial ribosomal protein L24	222.0	[0..49]	[247..19]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTQYLASK LKNFSNLPKE YIERSKKQVY WQTPKEINYL PRTVERKRFR YTTNRSWTGQ  60
   61 FRQQNMPGTV RRKVLVEPIE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWSFFRGDRI EVLVGKDKGK QGIVTQVIPE RNWVIVEGLN WHYRKVGGEK EFPGIIIKSE  60
   61 APLHVTKDIR LVDPSDLQGT DFEWRFTEEG EKVRVSLRSG RIIPIPETNN QTHDYKTPNA 120
  121 YIEREKDTPG AVVGEITFQP KLSTFEMDIM EEMGIKEERT PVKSYWY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	2ftcN
Description:	No description for 2ftcN was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits