YRC Public Data Repository - Protein Structure Prediction

Protein:	CG15434-PA
Organism:	Drosophila melanogaster
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG15434-PA.

Description	E-value	Query Range	Subject Range
gi\|49102208, gi\|... - gi\|67541468\|ref\|XP_664508.1\| hypothetical protein AN6904.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	129.0	[0..8]	[93..16]
gi\|55240398, gi\|... - gi\|58385876\|ref\|XP_314269.2\| ENSANGP00000018740 [Anopheles gambiae str. PEST], gi\|55240398\|gb\|EAA095...	128.0	[0..1]	[95..31]
gi\|159126969 - gi\|159126969\|gb\|EDP52085.1\| mitochondrial ribosomal protein L43, putative [Aspergillus fumigatus A11... gi\|66850941, gi\|... - gi\|70997101\|ref\|XP_753305.1\| mitochondrial ribosomal protein L43 [Aspergillus fumigatus Af293], gi\|6...	127.0	[0..8]	[93..16]
gi\|119174816, gi... - gi\|90298522\|gb\|EAS28153.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119174816\|re...	127.0	[0..8]	[93..16]
gi\|115399496, gi... - gi\|115399496\|ref\|XP_001215337.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	126.0	[0..8]	[93..16]
gi\|83772933 - gi\|83772933\|dbj\|BAE63061.1\| unnamed protein product [Aspergillus oryzae] gi\|169779459 - gi\|169779459\|ref\|XP_001824194.1\| hypothetical protein [Aspergillus oryzae RIB40]	126.0	[0..8]	[93..16]
gi\|85091765 - gi\|85091765\|ref\|XP_959062.1\| hypothetical protein NCU07549 [Neurospora crassa OR74A] gi\|32414711, gi\|... - gi\|32414711\|ref\|XP_327835.1\| hypothetical protein [Neurospora crassa], gi\|28920459\|gb\|EAA29826.1\| co...	126.0	[0..8]	[93..17]
gi\|38099185, gi\|... - gi\|39954264\|ref\|XP_364061.1\| hypothetical protein MGG_08906 [Magnaporthe grisea 70-15], gb\|EAA46563....	125.0	[0..8]	[93..16]
mRpL43-PA - The gene mitochondrial ribosomal protein L43 is referred to in FlyBase by the symbol Dmel\mRpL43 (CG...	124.0	[0..8]	[93..21]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITLFRLAS FTPKLKELRI ILDPKGDTSK GVREYVERFY PNLKKSNPDL PILVRECSGV  60
   61 QPRLYARYGN GKEVSLSLAN HAAPDIHKNL EAVGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits