YRC Public Data Repository - Protein Structure Prediction

Protein:	drm-PA, drm-PB
Organism:	Drosophila melanogaster
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for drm-PA, drm-PB.

Description	E-value	Query Range	Subject Range
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	159.0	[0..3]	[81..2581]
gi\|109066104 - gi\|109066104\|ref\|XP_001112671.1\| PREDICTED: similar to zinc finger protein 3 isoform 2 [Macaca mulat...	156.0	[0..2]	[81..452]
gi\|68381224 - gi\|68381224\|ref\|XP_685973.1\| PREDICTED: similar to Zinc finger protein 180 (HHZ168), partial [Danio ...	155.0	[0..3]	[81..624]
gi\|51094606 - gi\|51094606\|gb\|EAL23858.1\| zinc finger protein 3 (A8-51) [Homo sapiens]	153.0	[0..2]	[81..232]
gi\|114672806 - gi\|114672806\|ref\|XP_512090.2\| PREDICTED: similar to zinc finger protein [Pan troglodytes]	150.0	[0..2]	[81..479]
gi\|49901381 - gi\|49901381\|gb\|AAH76602.1\| Zscan20 protein [Mus musculus]	150.0	[0..3]	[81..922]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAVMRIDND DCRSDFRRKM RPKCEFICKY CQRRFTKPYN LMIHERTHKS PEITYSCEVC  60
   61 GKYFKQRDNL RQHRCSQCVW R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.09691
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits