YRC Public Data Repository - Protein Structure Prediction

Protein:	Thor-PA, FBpp0311456
Organism:	Drosophila melanogaster
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Thor-PA, FBpp0311456.

Description	E-value	Query Range	Subject Range
gi\|195359231, gi... - gi\|195359231\|ref\|XP_002045320.1\| GM11143 [Drosophila sechellia], gi\|194122576\|gb\|EDW44619.1\| GM11143... gi\|190660437, gi... - gi\|194855554\|ref\|XP_001968570.1\| GG24948 [Drosophila erecta], gi\|190660437\|gb\|EDV57629.1\| GG24948 [D... gi\|34334739, gi\|... - gi\|34334743\|gb\|AAQ64858.1\| Thor [Drosophila simulans], gi\|34334741\|gb\|AAQ64857.1\| Thor [Drosophila s...	177.0	[0..1]	[117..1]
gi\|71682965, gi\|... - gi\|74271859\|ref\|NP_001028241.1\| eukaryotic translation initiation factor 4E binding protein 2 [Rattu...	163.0	[0..1]	[117..1]
4EBP2_MOUSE - Eukaryotic translation initiation factor 4E-binding protein 2 OS=Mus musculus GN=Eif4ebp2 PE=1 SV=1	162.0	[0..1]	[117..1]
gi\|195148066, gi... - gi\|195148066\|ref\|XP_002014995.1\| GL18656 [Drosophila persimilis], gi\|194106948\|gb\|EDW28991.1\| GL1865... gi\|125985885, gi... - gi\|54645031\|gb\|EAL33771.1\| GA21364 [Drosophila pseudoobscura pseudoobscura], gi\|125985885\|ref\|XP_001... gi\|54645031\|gb\|E... - GA21364-PA [Drosophila pseudoobscura], GA21364 [Drosophila pseudoobscura pseudoobscura]	160.0	[0..1]	[117..1]
EIF4EBP2 - eukaryotic translation initiation factor 4E binding protein 2 gi\|55634971 - gi\|55634971\|ref\|XP_508163.1\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi... ENSMMUT000000325... - null, null gi\|60656297, gi\|... - gi\|60656299\|gb\|AAX32713.1\| eukaryotic translation initiation factor 4E binding protein 2 [synthetic ...	160.0	[0..1]	[117..1]
gi\|39794331, gi\|... - gi\|45361513\|ref\|NP_989333.1\| eukaryotic translation initiation factor 4E binding protein 2 [Xenopus ...	159.0	[0..6]	[117..2]
tr\|G1SJT0\|G1SJT0... - pep:novel chromosome:oryCun2:18:16549838:16567388:-1 gene:ENSOCUG00000003475 transcript:ENSOCUT00000... gi\|119918532 - gi\|119918532\|ref\|XP_001250585.1\| PREDICTED: similar to Eukaryotic translation initiation factor 4E-b... gi\|73953390 - gi\|73953390\|ref\|XP_546145.2\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi...	159.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASPTARQA ITQALPMITR KVVISDPIQM PEVYSSTPGG TLYSTTPGGT KLIYERAFMK  60
   61 NLRGSPLSQT PPSNVPSCLL RGTPRTPFRK CVPVPTELIK QTKSLKIEDQ EQFQLDL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	81.267606
Match:	PF05456.2
Description:	No description for PF05456.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.594	N/A	N/A	c.51.3	B12-dependend dehydatases associated subunit
View	Download	0.585	N/A	N/A	c.51.3	B12-dependend dehydatases associated subunit
View	Download	0.486	N/A	N/A	d.37.1	CBS-domain
View	Download	0.452	N/A	N/A	d.93.1	SH2 domain
View	Download	0.427	N/A	N/A	d.37.1	CBS-domain
View	Download	0.409	N/A	N/A	d.360.1	Description not found.
View	Download	0.361	N/A	N/A	d.31.1	Cdc48 domain 2-like
View	Download	0.241	N/A	N/A	d.93.1	SH2 domain
View	Download	0.218	N/A	N/A	a.118.1	ARM repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits