YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309919, CG3...
Organism:	Drosophila melanogaster
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309919, CG3....

Description	E-value	Query Range	Subject Range
gi\|85118928 - gi\|85118928\|ref\|XP_965543.1\| hypothetical protein NCU01912 [Neurospora crassa OR74A] gi\|32417248, gi\|... - gi\|32417248\|ref\|XP_329102.1\| hypothetical protein [Neurospora crassa], gi\|28927353\|gb\|EAA36307.1\| hy...	119.0	[0..1]	[167..979]
LEA76_BRANA - Late embryogenesis abundant protein 76 OS=Brassica napus PE=2 SV=2	110.0	[0..2]	[180..33]
gi\|49146397, gi\|... - gi\|49146397\|ref\|YP_025505.1\| putative phage-related minor tail protein [Caedibacter taeniospiralis],...	108.0	[0..2]	[180..17]
gi\|15228014, gi\|... - gi\|4415909\|gb\|AAD20140.1\| late embryogenesis abundant protein (AtECP63) [Arabidopsis thaliana], pir\|...	99.0	[0..3]	[181..79]
gi\|20126724 - gi\|20126724\|dbj\|BAB88878.1\| late embryogenesis-abundant protein [Brassica rapa]	99.0	[0..3]	[180..12]
gi\|39590079, gi\|... - gi\|39590079\|emb\|CAE61077.1\| Hypothetical protein CBG04827 [Caenorhabditis briggsae], gi\|187035581\|em... gi\|157765492 - gi\|157765492\|ref\|XP_001675089.1\| Hypothetical protein CBG04827 [Caenorhabditis briggsae AF16]	98.0	[0..2]	[180..165]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEGKKKAAE AAAAAKEAAA SAAQAAKTKA AGAAGSAKEA AGAAASAAKD KAGAAAASAK  60
   61 EKAAGAAVAV QQSASSAAIA AREKAANAAE FTKEKATAAA AAATEAATSA ASTVREKAAA 120
  121 AAVAVRAKAS ATAIAVRDSV TAVAVAAQGA AAAAKDKVAT AAASAAAAAK SKVTRQSQDE 180
  181 V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.6
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits