YRC Public Data Repository - Protein Structure Prediction

Protein:	Taf10b-PA
Organism:	Drosophila melanogaster
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Taf10b-PA.

Description	E-value	Query Range	Subject Range
gi\|109107478 - gi\|109107478\|ref\|XP_001109152.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit...	198.0	[0..12]	[144..127]
gi\|61363275, gi\|... - gi\|61363578\|gb\|AAX42413.1\| TAF10 RNA polymerase II TATA box binding protein-associated factor [synth... TAF10 - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa	195.0	[0..12]	[144..81]
gi\|76635972, gi\|... - gi\|76635972\|ref\|XP_884376.1\| PREDICTED: similar to TAF10 RNA polymerase II, TATA box binding protein...	193.0	[0..13]	[144..82]
gi\|73988322 - gi\|73988322\|ref\|XP_542454.2\| PREDICTED: similar to Transcription initiation factor TFIID subunit 10 ...	193.0	[0..12]	[144..81]
gi\|6119623 - gi\|6119623\|emb\|CAB59510.1\| mTAFII30 protein [Mus musculus]	190.0	[0..13]	[144..82]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSNFGIIY HNSAGGASSH GQSSGGGGGG DRDRTTPSSH LSDFMSQLED YTPLIPDAVT  60
   61 SHYLNMGGFQ SDDKRIVRLI SLAAQKYMSD IIDDALQHSK ARTHMQTTNT PGGSKAKDRK 120
  121 FTLTMEDLQP ALADYGINVR KVDYSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.27
Match:	1eqzD
Description:	Histone H4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits