YRC Public Data Repository - Protein Structure Prediction

Protein:	snapin-PA
Organism:	Drosophila melanogaster
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snapin-PA.

Description	E-value	Query Range	Subject Range
gi\|114559741 - gi\|114559741\|ref\|XP_001139135.1\| PREDICTED: similar to snapin [Pan troglodytes]	191.0	[0..21]	[129..95]
gi\|125984466, gi... - gi\|54644315\|gb\|EAL33056.1\| GA17213-PA [Drosophila pseudoobscura], gi\|125984466\|ref\|XP_001355997.1\| G...	179.0	[0..2]	[134..1]
SNAPIN - SNAP-associated protein gi\|60655891 - gi\|60655891\|gb\|AAX32509.1\| SNAP-associated protein [synthetic construct] ENSPTRT00000002487 - null	177.0	[0..21]	[129..19]
gi\|60652801, gi\|... - gi\|60652801\|gb\|AAX29095.1\| SNAP-associated protein [synthetic construct], gi\|60652799\|gb\|AAX29094.1\|...	177.0	[0..21]	[129..19]
CCDS1049.1_1 - null gi\|109016416 - gi\|109016416\|ref\|XP_001111730.1\| PREDICTED: similar to SNARE-associated protein Snapin (Synaptosomal...	176.0	[0..21]	[129..19]
gi\|134085838, gi... - gi\|61839259\|ref\|XP_589227.1\| PREDICTED: similar to snapin [Bos taurus], gi\|134085838\|ref\|NP_00107687...	175.0	[0..23]	[129..22]
gi\|74149154 - gi\|74149154\|dbj\|BAE22381.1\| unnamed protein product [Mus musculus]	172.0	[0..21]	[129..19]
gi\|57089637 - gi\|57089637\|ref\|XP_547578.1\| PREDICTED: similar to SNARE-associated protein Snapin (Synaptosomal-ass...	168.0	[0..23]	[129..22]
gi\|187608680, gi... - gi\|187608680\|ref\|NP_001120066.1\| hypothetical protein LOC100145066 [Xenopus (Silurana) tropicalis], ... gi\|148228503, gi... - gi\|56269188\|gb\|AAH87435.1\| LOC496040 protein [Xenopus laevis], gi\|148228503\|ref\|NP_001088776.1\| hypo...	161.0	[0..20]	[128..4]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDSTVTSL EENTENFCTN PTRDILAEGI TNLFKPTIER LDERVASTIQ LQAELRGQLD  60
   61 ALAAQLRDIE KAQSQIPEFA DKVKELLNVK HKVTVISNVL VTSQERLTGL HKLIEKEQRR 120
  121 RQALLDSALS TNIS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.749	a.216.1	Description not found.
View	Download	0.660	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.653	a.216.1	Description not found.
View	Download	0.618	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.551	a.7.15	Description not found.
View	Download	0.499	a.1.1	Globin-like
View	Download	0.489	d.122.1	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
View	Download	0.429	a.25.1	Ferritin-like
View	Download	0.421	a.25.1	Ferritin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits