YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7295927, gi\|2...
Organism:	Drosophila melanogaster
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7295927, gi|2....

Description	E-value	Query Range	Subject Range
gi\|37726728 - gi\|37726728\|gb\|AAO34515.1\| TATA-binding protein [Petromyzon marinus]	372.0	[0..1]	[259..32]
gi\|17298078 - gi\|17298078\|dbj\|BAB78513.1\| TATA-box binding protein [Lethenteron reissneri]	370.0	[0..1]	[259..41]
ENSPTRT00000066622 - null gi\|80474966 - gi\|80474966\|gb\|AAI09055.1\| TBP protein [Homo sapiens] gi\|190691993, gi... - gi\|254071353\|gb\|ACT64436.1\| TATA box binding protein protein [synthetic construct], gi\|190691993\|gb\|...	357.0	[0..1]	[259..32]
gi\|109073361 - gi\|109073361\|ref\|XP_001085250.1\| PREDICTED: similar to TATA-box-binding protein (TATA-box factor) (T...	356.0	[0..1]	[259..32]
TBP_PROFL - TATA-box-binding protein OS=Protobothrops flavoviridis GN=TBP PE=3 SV=1	349.0	[0..1]	[259..32]
TBP_TRIGA - TATA-box-binding protein OS=Trimeresurus gramineus GN=TBP PE=3 SV=1	349.0	[0..1]	[259..32]
gi\|61859970 - gi\|61859970\|ref\|XP_583731.1\| PREDICTED: similar to TBP0 isoform 1 [Bos taurus]	348.0	[0..1]	[259..32]
TBP_CHICK - TATA-box-binding protein OS=Gallus gallus GN=TBP PE=2 SV=1	347.0	[0..1]	[259..32]
TBP_XENTR - TATA-box-binding protein OS=Xenopus tropicalis GN=tbp PE=2 SV=1	347.0	[0..1]	[259..31]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMEALIKTK VMKTASMSRK TLLEDAKLST SDQDPSDRQV LANKASEGAE EMSLPIVNPR  60
   61 EPTLKDVLSI YENVSKLGDI QRYLNVIYKP FYCLAMTTSK FHLLELDMGL KNTAFEPEKH 120
  121 MALFVYRYSP TRSIRIYPHG NIYCQAFCKN SARYGLANIL KELRYLGYAP RLRRLKTNAV 180
  181 NATFSVPFNL NLRQFHLENP VVTRYDTSKY PFLVYKMMGT TVEIAIFPTG YVIVLFATTM 240
  241 EITKLAIAHI LPTLYRLKDP YQEQCKLSHS SGDIDYKLLW ENHFQKNGDK TTDW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	1rm1A
Description:	Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0356478192172359	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: