YRC Public Data Repository - Protein Structure Prediction

Protein:	a5-PA
Organism:	Drosophila melanogaster
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for a5-PA.

Description	E-value	Query Range	Subject Range
gi\|454076 - gi\|454076\|gb\|AAC46472.1\| A5	270.0	[0..1]	[210..1]
gi\|108870917, gi... - gi\|157133196\|ref\|XP_001662795.1\| phosphatidylethanolamine-binding protein [Aedes aegypti], gi\|108870...	254.0	[0..22]	[205..26]
gi\|125775312, gi... - gi\|54638646\|gb\|EAL28048.1\| GA10227-PA [Drosophila pseudoobscura], gi\|125775312\|ref\|XP_001358905.1\| G...	247.0	[0..24]	[209..1]
gi\|110763671 - gi\|110763671\|ref\|XP_623194.2\| PREDICTED: similar to CG6180-PA isoform 2 [Apis mellifera]	242.0	[0..8]	[207..17]
gi\|95102826, gi\|... - gi\|95102826\|gb\|ABF51354.1\| phosphatidylethanolamine binding protein isoform 2 [Bombyx mori], gi\|1537...	241.0	[0..13]	[205..4]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPALHLLF LGFICLARSQ DNDENVRRIM KEMEVIPEIL DEPPRELLRI KYDNTIDIEE  60
   61 GKTYTPTELK FQPRLDWNAD PESFYTVLMI CPDAPNRENP MYRSWLHWLV VNVPGLDIMK 120
  121 GQPISEYFGP LPPKDSGIQR YLILVYQQSD KLDFDEKKME LSNADGHSNF DVMKFTQKYE 180
  181 MGSPVAGNIF QSRWDEYVPE LMKTLYGVSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.522879
Match:	1kn3A
Description:	Phosphatidylethanolamine binding protein, PEBP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits