YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0303723, Tan...
Organism:	Drosophila melanogaster
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0303723, Tan....

Description	E-value	Query Range	Subject Range
gi\|77405648, gi\|... - gi\|77405648\|ref\|ZP_00782736.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae H36B], gi... gi\|76787788, gi\|... - gi\|76787788\|ref\|YP_330469.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae A909], gi\|7... gi\|77412295, gi\|... - gi\|77412295\|ref\|ZP_00788610.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae CJB111], ...	235.0	[0..55]	[278..7]
UPPS_THETN - Undecaprenyl pyrophosphate synthase OS=Thermoanaerobacter tengcongensis GN=uppS PE=3 SV=1 gi\|223488732, gi... - gi\|254479462\|ref\|ZP_05092789.1\| undecaprenyl pyrophosphate synthetase 1 [Carboxydibrachium pacificum... ISPT_CALS4 - Isoprenyl transferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM ...	235.0	[0..59]	[277..12]
UPPS_STRA5 - Undecaprenyl pyrophosphate synthase OS=Streptococcus agalactiae serotype V GN=uppS PE=3 SV=1 ISPT_STRA5 - Isoprenyl transferase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN=upp...	234.0	[0..55]	[278..7]
UPPS_METJA - Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Methanoc... UPPS_METJA - Undecaprenyl pyrophosphate synthase OS=Methanocaldococcus jannaschii GN=uppS PE=3 SV=1	234.0	[0..25]	[277..10]
ISPT_STRA3 - Isoprenyl transferase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=uppS PE=3 SV=1 UPPS_STRA3 - Undecaprenyl pyrophosphate synthase OS=Streptococcus agalactiae serotype III GN=uppS PE=3 SV=1	233.0	[0..55]	[278..7]
gi\|23128548, gi\|... - gi\|23128548\|ref\|ZP_00110393.1\| COG0020: Undecaprenyl pyrophosphate synthase [Nostoc punctiforme PCC ...	233.0	[0..52]	[277..5]
ISPT1_NOSS1 - Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1 gi\|25314096 - pir\|\|AD2180 undecaprenyl pyrophosphate synthetase [imported] - Nostoc sp. (strain PCC 7120)	232.0	[0..52]	[277..5]
ISPT_ANAVT - Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2	231.0	[0..52]	[277..5]
UPPS_METTH - Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) OS=Methanot... gi\|7447505 - gi\|7447505\|pir\|\|H69128 conserved hypothetical protein MTH232 - Methanobacterium thermoautotrophicum ...	231.0	[0..43]	[277..4]
gi\|166854533, gi... - gi\|167040293\|ref\|YP_001663278.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X514], gi... gi\|242258359, gi... - gi\|242258359\|ref\|ZP_04803172.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X513], gi\|...	231.0	[0..59]	[277..14]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVLCLLLG RILLLLVGGY ELMWRLRERL NALAVRSYDL WRSKAAREAH ERRVLADCRS  60
   61 QLTKTPQHLV LVISPVDAGV DAVLLSRIFD FALDVGIKHV SLYDRRTKGR GYVDMADLCR 120
  121 STNADTGSCL KWPPVASPSK LENQPKNGQK TNGYVNGSHS PQLQLHQISA SDGHALIADV 180
  181 CRELYEDSKT ELVQSLLKQK REALTEQISD MLSKRLGFEA PEPELGIVFA RQTCTYGLLP 240
  241 WHARFTEFHT HPSGRHFDVE TFASILCKYS RCEQRWGT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1jp3A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
prenyltransferase activity	0.0468536385395607	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: