YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0304561, Pino-PA
Organism:	Drosophila melanogaster
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0304561, Pino-PA.

Description	E-value	Query Range	Subject Range
Pino-PB - The gene Pinocchio is referred to in FlyBase by the symbol Dmel\Pino (CG4710, FBgn0016926). It is a ...	312.0	[0..1]	[171..79]
gi\|125986473, gi... - gi\|54645326\|gb\|EAL34066.1\| GA18375-PA [Drosophila pseudoobscura], gi\|125986473\|ref\|XP_001357000.1\| G...	300.0	[0..6]	[170..64]
gi\|55237968, gi\|... - gi\|58390501\|ref\|XP_317770.2\| ENSANGP00000022225 [Anopheles gambiae str. PEST], gi\|55237968\|gb\|EAA123...	229.0	[0..1]	[166..1]
gi\|108876991, gi... - gi\|157115165\|ref\|XP_001652547.1\| hypothetical protein AaeL_AAEL007114 [Aedes aegypti], gi\|108876991\|...	197.0	[0..1]	[166..36]
gi\|91088319 - gi\|91088319\|ref\|XP_969927.1\| PREDICTED: similar to CG4710-PA, isoform A [Tribolium castaneum]	135.0	[0..1]	[117..1]
gi\|110755449 - gi\|110755449\|ref\|XP_392268.2\| PREDICTED: similar to smell impaired 21F CG4710-PB, isoform B, partial...	132.0	[0..1]	[115..7]

Back

Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIASVHGPQ IADICSPLSH HNLGLSASLP DLVGSPLEIS MDNVLTIEEL RQHMGSCFTC  60
   61 GVSWTDDHVS LDCSECGGYS LERPCPLCDG QCGVQWKRDF AMSHACSQAR WVGVCISYPE 120
  121 VVAGVQLPVG AGAGAATSCA AAAANQLRLA QELCSRLEQL STSTASKSGR I

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2pgzA
Description:	No description for 2pgzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits