YRC Public Data Repository - Protein Structure Prediction

Protein:	Pino-PB
Organism:	Drosophila melanogaster
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pino-PB.

Description	E-value	Query Range	Subject Range
gi\|125986473, gi... - gi\|54645326\|gb\|EAL34066.1\| GA18375-PA [Drosophila pseudoobscura], gi\|125986473\|ref\|XP_001357000.1\| G...	362.0	[0..22]	[248..11]
gi\|220953414, gi... - gi\|220953414\|gb\|ACL89250.1\| Pino-PA [synthetic construct], gi\|220943230\|gb\|ACL84158.1\| Pino-PA [synt... FBpp0304561, Pino-PA - The gene Pinocchio is referred to in FlyBase by the symbol Dmel\Pino (CG4710, FBgn0016926). It is a ...	311.0	[0..79]	[249..1]
gi\|55237968, gi\|... - gi\|58390501\|ref\|XP_317770.2\| ENSANGP00000022225 [Anopheles gambiae str. PEST], gi\|55237968\|gb\|EAA123...	242.0	[0..79]	[244..1]
gi\|108876991, gi... - gi\|157115165\|ref\|XP_001652547.1\| hypothetical protein AaeL_AAEL007114 [Aedes aegypti], gi\|108876991\|...	211.0	[0..77]	[244..34]
gi\|91088319 - gi\|91088319\|ref\|XP_969927.1\| PREDICTED: similar to CG4710-PA, isoform A [Tribolium castaneum]	141.0	[0..79]	[195..1]
gi\|110755449 - gi\|110755449\|ref\|XP_392268.2\| PREDICTED: similar to smell impaired 21F CG4710-PB, isoform B, partial...	138.0	[0..78]	[193..6]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGSNNNHI SASSSSSNNN NNSSLVQQQQ QRSTTSVSVS SSHIVTEWED GIIFDVDDPD  60
   61 FCNLATDKLN FIVPSAANMS IASVHGPQIA DICSPLSHHN LGLSASLPDL VGSPLEISMD 120
  121 NVLTIEELRQ HMGSCFTCGV SWTDDHVSLD CSECGGYSLE RPCPLCDGQC GVQWKRDFAM 180
  181 SHACSQARWV GVCISYPEVV AGVQLPVGAG AGAATSCAAA AANQLRLAQE LCSRLEQLST 240
  241 STASKSGRI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits