YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24580677, gi\|...
Organism:	Drosophila melanogaster
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24580677, gi|....

Description	E-value	Query Range	Subject Range
gi\|66771583, gi\|... - gi\|66771583\|gb\|AAY55103.1\| IP07658p [Drosophila melanogaster], gi\|66771159\|gb\|AAY54891.1\| IP07958p [...	421.0	[0..24]	[212..30]
gi\|125985311, gi... - gi\|54644743\|gb\|EAL33483.1\| GA12459-PA [Drosophila pseudoobscura], gi\|125985311\|ref\|XP_001356419.1\| G...	248.0	[0..69]	[212..45]
AGAP000859-PA - \|protein_coding\|X:15838050:15838923:1\|gene:AGAP000859 gi\|118788568, gi... - gi\|118788568\|ref\|XP_555854.2\| AGAP000859-PA [Anopheles gambiae str. PEST], gi\|116126169\|gb\|EAL39760....	82.0	[0..82]	[211..99]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPWPELQK EYSAGQAQIE HDALPISIMA MALLSLTNKG IASQYASDEG LDEMVGLRSL  60
   61 EHRAEEQQPD RSTSKMLSAL FGFSPSTPHP TEMAMVMPHQ LPPMYYNDFY EDLVTTKRND 120
  121 VHSAGCDCKV TNELVDLGGL HFPRFLMNAV CESGAGRDLA KCSHGSNCRP LEYKVKVLAQ 180
  181 TSQSDHPYSW MNKDQPWQFK TVTVTAGCFC TK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.52
Match:	1m4uA
Description:	Noggin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.460327839636602	bayes_pls_golite062009
protein binding	0.348747592828381	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits

Predicted functions: