YRC Public Data Repository - Protein Structure Prediction

Protein:	CG2789-PA
Organism:	Drosophila melanogaster
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG2789-PA.

Description	E-value	Query Range	Subject Range
gi\|125985319, gi... - gi\|54644747\|gb\|EAL33487.1\| GA15462-PA [Drosophila pseudoobscura], gi\|125985319\|ref\|XP_001356423.1\| G...	196.0	[0..6]	[183..1]
gi\|34576920, gi\|... - gi\|7448310\|pir\|\|JE0149 peripheral benzodaizepine receptor - human, gi\|34576920\|gb\|AAQ75703.1\| benzod...	195.0	[0..7]	[175..2]
gi\|109094434 - gi\|109094434\|ref\|XP_001108482.1\| PREDICTED: benzodiazapine receptor (peripheral) isoform 2 [Macaca m...	194.0	[0..7]	[175..2]
gi\|61371642, gi\|... - gi\|61371642\|gb\|AAX43705.1\| benzodiazapine receptor peripheral [synthetic construct], gi\|30584343\|gb\|...	194.0	[0..7]	[175..2]
gi\|58380631, gi\|... - gi\|58380631\|ref\|XP_310673.2\| ENSANGP00000023128 [Anopheles gambiae str. PEST], gi\|55243380\|gb\|EAA065...	194.0	[0..8]	[183..7]
gi\|114686790, gi... - gi\|114686790\|ref\|XP_001171840.1\| PREDICTED: similar to peripheral benzodaizepine receptor - human is...	193.0	[0..7]	[175..2]
gi\|30313362, gi\|... - gi\|30313362\|gb\|AAK31586.1\| peripheral-type benzodiazepine receptor [Oncorhynchus mykiss], gi\|1851336...	191.0	[0..9]	[169..2]
gi\|47229726 - gi\|47229726\|emb\|CAG06922.1\| unnamed protein product [Tetraodon nigroviridis]	187.0	[0..12]	[167..121]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRPCAGNI LRIAGAVILP NLGGIYNGRL TRQHLQSWYA NLKFPSFKPP NSVFAPMWIS  60
   61 LYAGMGYGSY LVWRDGGGFA GEAAKLPLIA YGTQLALNWA WTPIFFGQHN IKGGLIDIVA 120
  121 LTAAASACGV LFYRVNKTAG LLFVPYVAWL GFATALNYAI WKLNPEKEQA PKDEEKPSSS 180
  181 HAKSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	85.102373
Match:	PF03073.6
Description:	No description for PF03073.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits