YRC Public Data Repository - Protein Structure Prediction

Protein:	CG13692-PA
Organism:	Drosophila melanogaster
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG13692-PA.

Description	E-value	Query Range	Subject Range
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	193.0	[0..1]	[191..8]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	193.0	[0..1]	[191..11]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	193.0	[0..1]	[191..11]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	193.0	[0..1]	[190..63]
gi\|50738954 - gi\|50738954\|ref\|XP_419342.1\| PREDICTED: similar to ras-related protein [Gallus gallus]	193.0	[0..1]	[191..199]
gi\|1381678 - gi\|1381678\|gb\|AAB97115.1\| small GTP-binding protein [Glycine max]	192.0	[0..1]	[191..8]
RIC1_ORYSJ - Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2 gi\|125526416 - gi\|125526416\|gb\|EAY74530.1\| hypothetical protein OsI_02420 [Oryza sativa Indica Group] RIC1_ORYSA - Ras-related protein RIC1 - Oryza sativa (Rice)	192.0	[0..1]	[191..8]
RIC1_ORYSA - (P40392) Ras-related protein RIC1	192.0	[0..1]	[191..8]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	192.0	[0..1]	[191..8]
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	192.0	[0..1]	[191..8]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTCICLGPK RAGKTHLLKA LQDPESIDET TFSMPTIGTG IYRIHFPTKS PNGDKNKPPP  60
   61 SEAPANIPHG GKNLPKSIQI LEIGGSMAPL WRQYFEDVKK LIYVVDTSNL CQISAAGVLF 120
  121 YSILTEPRLQ HNTKILLVLA KMDYSYRQMR NEALLMLQMQ KLQKQIRQQV TIVEASAVTK 180
  181 VGLDPIYDWL QRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	2folA
Description:	Crystal structure of human RAB1A in complex with GDP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine ribonucleotide binding	1.20604888640669	bayes_pls_golite062009
ribonucleotide binding	1.20583451296567	bayes_pls_golite062009
purine nucleotide binding	1.19847297466213	bayes_pls_golite062009
nucleotide binding	1.19068781699968	bayes_pls_golite062009
binding	1.15116915808666	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
ATP binding	0.875497089235599	bayes_pls_golite062009
adenyl ribonucleotide binding	0.840327351425478	bayes_pls_golite062009
adenyl nucleotide binding	0.818646405034853	bayes_pls_golite062009
hydrolase activity	0.502565068825558	bayes_pls_golite062009
protein binding	0.0523017713981208	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: