YRC Public Data Repository - Protein Structure Prediction

Protein:	RpLP1-PA, FBpp03...
Organism:	Drosophila melanogaster
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RpLP1-PA, FBpp03....

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	127.0	[0..3]	[112..2]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	114.0	[0..1]	[112..1]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	109.0	[0..1]	[112..1]
RLA1_OSCBR - 60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1 RLA1_OSCTI - 60S acidic ribosomal protein P1 OS=Oscheius tipulae GN=rpl-21 PE=3 SV=1	107.0	[0..1]	[112..1]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	107.0	[0..1]	[112..1]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	107.0	[0..7]	[112..1]
gi\|60417196 - gi\|60417196\|emb\|CAH59398.1\| 60S acidic ribosomal protein P1 [Platichthys flesus]	105.0	[0..1]	[112..1]
gi\|109084446 - gi\|109084446\|ref\|XP_001095290.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 [Macaca mulat...	105.0	[0..2]	[112..137]
gi\|38047823, gi\|... - gi\|38047823\|gb\|AAR09814.1\| similar to Drosophila melanogaster RpP2 [Drosophila yakuba], gi\|195470260...	104.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKAELACV YASLILVDDD VAVTGEKINT ILKAANVEVE PYWPGLFAKA LEGINVKDLI  60
   61 TNIGSGVGAA PAGGAAPAAA AAAPAAESKK EEKKKEEESD QSDDDMGFGL FD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.886057
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.526	N/A	N/A	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.523	N/A	N/A	a.77.1	DEATH domain
View	Download	0.520	N/A	N/A	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.516	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.515	N/A	N/A	a.77.1	DEATH domain
View	Download	0.500	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.429	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.418	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.397	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.325	N/A	N/A	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits