YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0303491, FBp...
Organism:	Drosophila melanogaster
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0303491, FBp....

Description	E-value	Query Range	Subject Range
AGAP009824-PA - NADH dehydrogenase (ubiquinone) Fe-S protein 5\|protein_coding\|3R:43818464:43818875:-1\|gene:AGAP00982... gi\|55236042, gi\|... - gi\|58391864\|ref\|XP_318932.2\| AGAP009824-PA [Anopheles gambiae str. PEST], gi\|55236042\|gb\|EAA14312.2\|...	158.0	[0..1]	[101..1]
gi\|125985433\|ref... - GA11014-PA [Drosophila pseudoobscura], GA11014 [Drosophila pseudoobscura pseudoobscura] gi\|195147344, gi... - gi\|195147344\|ref\|XP_002014640.1\| GL18846 [Drosophila persimilis], gi\|194106593\|gb\|EDW28636.1\| GL1884... gi\|125985433, gi... - gi\|54644804\|gb\|EAL33544.1\| GA11014 [Drosophila pseudoobscura pseudoobscura], gi\|125985433\|ref\|XP_001...	148.0	[0..1]	[101..1]
gi\|108871646, gi... - gi\|94468586\|gb\|ABF18142.1\| mitochondrial NADH dehydrogenase (ubiquinone) Fe-S protein [Aedes aegypti...	134.0	[0..1]	[101..1]
nduf-5 - status:Confirmed UniProt:Q9N3D9 protein_id:AAF60773.1	131.0	[0..2]	[89..13]
gi\|39595521, gi\|... - gi\|39595521\|emb\|CAE60559.1\| Hypothetical protein CBG04188 [Caenorhabditis briggsae], gi\|187036338\|em... gi\|157746369 - gi\|157746369\|ref\|XP_001668280.1\| Hypothetical protein CBG04188 [Caenorhabditis briggsae AF16]	129.0	[0..2]	[89..13]
gi\|73976897 - gi\|73976897\|ref\|XP_532550.2\| PREDICTED: similar to NADH-ubiquinone oxidoreductase 15 kDa subunit (Co...	114.0	[0..21]	[96..151]
NDUS5_PANTR - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Pan troglodytes GN=NDUFS5 PE=3 SV=3 NDUFS5 - NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)	114.0	[0..21]	[96..27]
NDUS5_GORGO - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Gorilla gorilla gorilla GN=NDUFS5 PE=3 SV=3 gi\|111661859 - gi\|111661859\|gb\|ABH12170.1\| mitochondrial complex I subunit NDUFS5 [Gorilla gorilla]	113.0	[0..21]	[96..27]
gi\|109020306, gi... - gi\|109020306\|ref\|XP_001083338.1\| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (N...	113.0	[0..21]	[96..27]
NDUS5_BOVIN - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Bos taurus GN=NDUFS5 PE=1 SV=2	111.0	[0..21]	[96..27]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTPFLRLP LTDLTGCLIN HQTYDKCGKF EMKMMECFEA YGLERGKREC ADLISDFQEC  60
   61 VGMQKQLMRF HAMRNERYKQ WLKGERKGQE FFADPPRVDA Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.928	a.7.16	Description not found.
View	Download	0.883	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.858	f.15.1	Small-conductance potassium channel
View	Download	0.846	a.7.16	Description not found.
View	Download	0.845	a.7.16	Description not found.
View	Download	0.832	f.15.1	Small-conductance potassium channel
View	Download	0.818	a.7.16	Description not found.
View	Download	0.778	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.700	a.2.7	tRNA-binding arm

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits