YRC Public Data Repository - Protein Structure Prediction

Protein:	RL37_RAT
Organism:	Rattus norvegicus
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL37_RAT.

Description	E-value	Query Range	Subject Range
gi\|72538603, gi\|... - gi\|72538603\|gb\|EAL32366.2\| GA21535-PA [Drosophila pseudoobscura], gi\|125983088\|ref\|XP_001355309.1\| G...	178.0	[0..1]	[90..288]
gi\|74009722 - gi\|74009722\|ref\|XP_850092.1\| PREDICTED: similar to ribosomal protein L37 [Canis familiaris]	147.0	[0..1]	[88..58]
gi\|159127942 - gi\|159127942\|gb\|EDP53057.1\| 60S ribosomal protein L37 [Aspergillus fumigatus A1163] gi\|66852567, gi\|... - gi\|71000493\|ref\|XP_754930.1\| 60S ribosomal protein L37 [Aspergillus fumigatus Af293], gi\|66852567\|gb...	132.0	[0..3]	[90..69]
gi\|4262019, gi\|2... - gi\|4262019\|gb\|AAD14319.1\|S79980_1 ribosomal protein L37 [Bos taurus], gi\|2829674\|sp\|P79244\|RL37_BOVI...	128.0	[0..1]	[93..1]
gi\|91090071 - gi\|91090071\|ref\|XP_969650.1\| PREDICTED: similar to Probable 60S ribosomal protein L37-A [Tribolium c...	126.0	[0..2]	[88..29]
FBpp0303429, RpL... - The gene Ribosomal protein L37a is referred to in FlyBase by the symbol Dmel\RpL37a (CG9091, FBgn003...	125.0	[0..1]	[92..1]
gi\|47210130 - gi\|47210130\|emb\|CAF95579.1\| unnamed protein product [Tetraodon nigroviridis]	125.0	[0..2]	[97..2]
gi\|115474631, gi... - gi\|115474631\|ref\|NP_001060912.1\| Os08g0128500 [Oryza sativa (japonica cultivar-group)], gi\|113622881...	125.0	[0..2]	[94..21]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKGTSSFGK RRNKTHTLCR RCGSKAYHLQ KSTCGKCGYP AKRKRKYNWS AKAKRRNTTG  60
   61 TGRMRHLKIV YRRFRHGFRE GTTPKPKRAA VAASSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1s1iY
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits