YRC Public Data Repository - Protein Structure Prediction

Protein:	ANFC_RAT
Organism:	Rattus norvegicus
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANFC_RAT.

Description	E-value	Query Range	Subject Range
ANFD_LITCT - C-type natriuretic peptide 2 OS=Lithobates catesbeiana PE=3 SV=1	115.0	[0..1]	[126..1]
ANF_ACITR - Natriuretic peptides A OS=Acipenser transmontanus GN=nppa PE=2 SV=1	109.0	[0..1]	[126..1]
ANFC_PIG - C-type natriuretic peptide OS=Sus scrofa GN=NPPC PE=1 SV=2 gi\|108253 - pir\|\|A36155 natriuretic peptide C precursor - pig	109.0	[0..19]	[126..19]
ANFC_TRISC - C-type natriuretic peptide prohormone OS=Triakis scyllium PE=1 SV=2	108.0	[0..1]	[126..1]
ANFC_SHEEP - C-type natriuretic peptide OS=Ovis aries GN=NPPC PE=3 SV=1	108.0	[0..19]	[126..19]
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	108.0	[0..2]	[126..1]
gi\|73994136 - gi\|73994136\|ref\|XP_852684.1\| PREDICTED: similar to natriuretic peptide precursor type C [Canis famil...	108.0	[0..19]	[126..19]
ANFC_BOVIN - C-type natriuretic peptide OS=Bos taurus GN=NPPC PE=2 SV=1	107.0	[0..19]	[126..19]
ANF_RAT - Natriuretic peptides A OS=Rattus norvegicus GN=Nppa PE=1 SV=1	106.0	[0..2]	[126..1]
ANFC_MOUSE - C-type natriuretic peptide OS=Mus musculus GN=Nppc PE=3 SV=1	106.0	[0..19]	[126..19]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSQLIACA LLLALLSLRP SEAKPGTPPK VPRTPPGEEL AEPQAAGGNQ KKGDKTPGGG  60
   61 GANLKGDRSR LLRDLRVDTK SRAAWARLLH EHPNARKYKG GNKKGLSKGC FGLKLDRIGS 120
  121 MSGLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.173925
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits