YRC Public Data Repository - Protein Structure Prediction

Protein:	RS25_RAT
Organism:	Rattus norvegicus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS25_RAT.

Description	E-value	Query Range	Subject Range
gi\|109018521 - gi\|109018521\|ref\|XP_001108187.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta]	184.0	[0..5]	[125..188]
gi\|73955048 - gi\|73955048\|ref\|XP_536549.2\| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris]	173.0	[0..1]	[125..75]
gi\|114572319 - gi\|114572319\|ref\|XP_514173.2\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]	171.0	[0..12]	[125..75]
gi\|47188265 - gi\|47188265\|emb\|CAF87311.1\| unnamed protein product [Tetraodon nigroviridis]	164.0	[0..1]	[125..14]
gi\|60652757 - gi\|60652757\|gb\|AAX29073.1\| ribosomal protein S25 [synthetic construct]	160.0	[0..1]	[125..1]
gi\|119569329, gi... - gi\|88988836\|ref\|XP_942473.1\| PREDICTED: similar to 40S ribosomal protein S25 [Homo sapiens], gi\|1195...	159.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKDDKKKK DAGKSAKKDK DPVNKSGGKA KKKKWSKGKV RDKLNNLVLF DKATYDKLCK  60
   61 EVPNYKLITP AVVSERLKIR GSLARAALQE LLSKGLIKLV SKHRAQVIYT RNTKGGDAPA 120
  121 AGEDA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	2j5oA
Description:	No description for 2j5oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits