YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5I_RAT
Organism:	Rattus norvegicus
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5I_RAT.

Description	E-value	Query Range	Subject Range
gi\|47223717 - gi\|47223717\|emb\|CAF99326.1\| unnamed protein product [Tetraodon nigroviridis]	91.0	[0..1]	[71..1]
gi\|68359567 - gi\|68359567\|ref\|XP_696636.1\| PREDICTED: similar to potassium channel, subfamily V, member 2 [Danio r...	91.0	[0..1]	[71..549]
gi\|95102788, gi\|... - gi\|95102788\|gb\|ABF51335.1\| H+ transporting ATP synthase subunit e [Bombyx mori], gi\|148298748\|ref\|NP...	90.0	[0..4]	[71..9]
ATP5I_PONPY - ATP synthase e chain, mitochondrial - Pongo pygmaeus (Orangutan) ATP5I_PONAB - ATP synthase subunit e, mitochondrial OS=Pongo abelii GN=ATP5I PE=3 SV=3	86.0	[0..1]	[71..1]
gi\|263673 - gi\|263673\|gb\|AAB24947.1\| F1Fo-ATPase subunit e [Mus sp.] ATP5I_MOUSE - ATP synthase subunit e, mitochondrial OS=Mus musculus GN=Atp5i PE=1 SV=2	85.0	[0..1]	[71..1]
ATP5I_BOVIN - ATP synthase subunit e, mitochondrial OS=Bos taurus GN=ATP5I PE=1 SV=2	85.0	[0..1]	[71..1]
gi\|91076400 - gi\|91076400\|ref\|XP_969165.1\| PREDICTED: similar to H+ transporting ATP synthase subunit e [Tribolium...	84.0	[0..4]	[71..7]
gi\|108873886, gi... - gi\|94469312\|gb\|ABF18505.1\| ATP synthase E chain [Aedes aegypti], gi\|157124769\|ref\|XP_001660515.1\| hy...	84.0	[0..4]	[70..7]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPVQVSPL IKFGRYSALI LGMAYGAKRY SYLKPRAEEE RRIAAEEKKR LDELKRIERE  60
   61 LAEAEDVSIF K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.721246
Match:	PF05680.3
Description:	No description for PF05680.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits