YRC Public Data Repository - Protein Structure Prediction

Protein:	PRS8_RAT
Organism:	Rattus norvegicus
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRS8_RAT.

Description	E-value	Query Range	Subject Range
gi\|109116761 - gi\|109116761\|ref\|XP_001108909.1\| PREDICTED: similar to for proteasomal ATPase (SUG1) [Macaca mulatta...	1.0E-81	[8..406]	[79..477]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	2.0E-79	[9..404]	[320..723]
PRS8_XENLA - 26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2	2.0E-78	[7..406]	[2..400]
gi\|50603847, gi\|... - gi\|51230594\|ref\|NP_001003740.1\| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Danio rerio]...	2.0E-78	[1..406]	[1..406]
gi\|54696318 - gi\|54696318\|gb\|AAV38531.1\| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic constru...	2.0E-78	[1..406]	[1..406]
gi\|976227, gi\|74... - gi\|976227\|dbj\|BAA07919.1\| 26S proteasome subunit p45 [Homo sapiens], pir\|\|S65536 26S proteasome chai...	2.0E-78	[1..406]	[1..406]
gi\|12846001 - gi\|12846001\|dbj\|BAB26990.1\| unnamed protein product [Mus musculus]	3.0E-78	[1..406]	[1..406]
gi\|45361563, gi\|... - gi\|45361563\|ref\|NP_989358.1\| hypothetical protein LOC394988 [Xenopus (Silurana) tropicalis], gi\|3985...	4.0E-78	[4..406]	[12..414]
gi\|119524342, gi... - gi\|119719222\|ref\|YP_919717.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	1.0E-77	[9..405]	[321..713]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDGPEQME LEEGKAGSGL RQYYLSKIEE LQLIVNDKSQ NLRRLQAQRN ELNAKVRLLR  60
   61 EELQLLQEQG SYVGEVVRAM DKKKVLVKVH PEGKFVVDVD KNIDINDVTP NCRVALRNDS 120
  121 YTLHKILPNK VDPLVSLMMV EKVPDSTYEM IGGLDKQIKE IKEVIELPVK HPELFEALGI 180
  181 AQPKGVLLYG PPGTGKTLLA RAVAHHTDCT FIRVSGSELV QKFIGEGARM VRELFVMARE 240
  241 HAPSIIFMDE IDSIGSSRLE GGSGGDSEVQ RTMLELLNQL DGFEATKNIK VIMATNRIDI 300
  301 LDSALLRPGR IDRKIEFPPP NEEARLDILK IHSRKMNLTR GINLRKIAEL MPGASGAEVK 360
  361 GVCTEAGMYA LRERRVHVTQ EDFEMAVAKV MQKDSEKNMS IKKLWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits