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View Structure Prediction Details

Protein: STP2_RAT
Organism: Rattus norvegicus
Length: 114 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP2_RAT.

Description E-value Query
Range
Subject
Range
gi|110055, gi|54874 - gi|54874|emb|CAA34914.1| unknown protein [Mus musculus], pir||S14529 transition protein 2 - mouse
165.0 [0..1] [114..403]
gi|109127617 - gi|109127617|ref|XP_001106917.1| PREDICTED: similar to Nuclear transition protein 2 (TP-2) (TP2) [Ma...
126.0 [0..1] [112..52]
gi|18149003 - gi|18149003|dbj|BAB83536.1| transition protein 2 [Macaca fascicularis]
107.0 [0..1] [112..29]
STP2_BOVIN - Nuclear transition protein 2 OS=Bos taurus GN=TNP2 PE=2 SV=2
105.0 [0..1] [113..1]
gi|51036639, gi|... - gi|51036639|ref|NP_058753.2| transition protein 2 [Rattus norvegicus], gi|50927631|gb|AAH78849.1| Tr...
105.0 [0..1] [114..1]
STP2_PONPY - Nuclear transition protein 2 (Fragment) OS=Pongo pygmaeus GN=TNP2 PE=2 SV=1
103.0 [0..1] [109..1]
STP2_CANLF - Nuclear transition protein 2 OS=Canis lupus familiaris GN=TNP2 PE=2 SV=1
100.0 [0..1] [112..1]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKMQSLPT THPHPHSSSR PQSHTNNQCA CSHHCRSCSQ AGHPSSSSSP SPGPPTKHPK  60
   61 TPMHSRYSPS RPSHRGSCPK NRKTLEGKVS KRKAVRRRKR THRAKRRSSG RRYK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 61.39794
Match: PF01254.9
Description: No description for PF01254.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle