YRC Public Data Repository - Protein Structure Prediction

Protein:	GALP_RAT
Organism:	Rattus norvegicus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GALP_RAT.

Description	E-value	Query Range	Subject Range
GALP_MOUSE - Galanin-like peptide OS=Mus musculus GN=Galp PE=2 SV=1 gi\|147898145, gi... - gi\|151555343\|gb\|AAI48727.1\| Galanin-like peptide [synthetic construct], gi\|147898145\|gb\|AAI40310.1\| ...	223.0	[0..1]	[114..1]
HGNC:24840\|MIM:6... - peptide GALP - galanin-like peptide gi\|151555123, gi... - gi\|151555123\|gb\|AAI48723.1\| Galanin-like peptide [synthetic construct], gi\|146327238\|gb\|AAI41469.1\| ...	186.0	[0..18]	[113..19]
gi\|114679247 - gi\|114679247\|ref\|XP_524495.2\| PREDICTED: similar to galanin-like peptide precursor [Pan troglodytes]	185.0	[0..18]	[113..19]
gi\|109126180 - gi\|109126180\|ref\|XP_001090902.1\| PREDICTED: similar to galanin-like peptide precursor [Macaca mulatt... GALP_MACNE - Galanin-like peptide OS=Macaca nemestrina GN=GALP PE=2 SV=1	185.0	[0..18]	[113..18]
GALP_PIG - Galanin-like peptide OS=Sus scrofa GN=GALP PE=1 SV=1	164.0	[0..8]	[97..7]
gi\|73947395 - gi\|73947395\|ref\|XP_853936.1\| PREDICTED: similar to zinc finger protein 444 [Canis familiaris]	153.0	[0..19]	[105..383]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSKHLVLF LTILLSLAET PDSAPAHRGR GGWTLNSAGY LLGPVLHLSS KANQGRKTDS  60
   61 ALEILDLWKA IDGLPYSRSP RMTKRSMGET FVKPRTGDLR IVDKNVPDEE ATLNL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits