YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM13_RAT
Organism:	Rattus norvegicus
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM13_RAT.

Description	E-value	Query Range	Subject Range
gi\|49118898 - gi\|49118898\|gb\|AAH72975.1\| Timm13 protein [Xenopus laevis]	103.0	[0..4]	[95..11]
tim13 - TIM22 inner membrane protein import complex subunit Tim13 TIM13_SCHPO - Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharomyces pombe (strain 9...	102.0	[0..5]	[95..4]
gi\|89272450, gi\|... - gi\|89272450\|emb\|CAJ82383.1\| translocase of inner mitochondrial membrane 13 homolog a (yeast) [Xenopu...	102.0	[0..1]	[95..1]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	100.0	[0..10]	[90..165]
gi\|47225684 - gi\|47225684\|emb\|CAG08027.1\| unnamed protein product [Tetraodon nigroviridis]	100.0	[0..1]	[95..1]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	97.0	[0..3]	[92..104]
gi\|91092938 - gi\|91092938\|ref\|XP_972097.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 13 ho...	97.0	[0..8]	[95..2]
gi\|15030319 - gi\|15030319\|gb\|AAH11436.1\| Translocase of inner mitochondrial membrane 13 homolog (yeast) [Mus muscu...	95.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGFGSDFG GTGGGKLDPG AIMEQVKVQI AVANAQELLQ RMTDKCFRKC IGKPGGSLDN  60
   61 SEQKCIAMCM DRYMDAWNTV SRAYNSRLQR ERANM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.09691
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits