YRC Public Data Repository - Protein Structure Prediction

Protein:	CCKN_RAT
Organism:	Rattus norvegicus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKN_RAT.

Description	E-value	Query Range	Subject Range
CCKN_MOUSE - Cholecystokinin OS=Mus musculus GN=Cck PE=1 SV=3	176.0	[0..1]	[115..1]
gi\|30584119, gi\|... - gi\|60653099\|gb\|AAX29244.1\| cholecystokinin [synthetic construct], gi\|60653097\|gb\|AAX29243.1\| cholecy...	174.0	[0..1]	[115..1]
gi\|55620065 - gi\|55620065\|ref\|XP_516386.1\| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]	174.0	[0..1]	[115..1]
CCK - cholecystokinin gi\|157927968, gi... - gi\|60656149\|gb\|AAX32638.1\| cholecystokinin [synthetic construct], gi\|60656147\|gb\|AAX32637.1\| cholecy...	174.0	[0..1]	[115..1]
CCKN_BOVIN - Cholecystokinin OS=Bos taurus GN=CCK PE=1 SV=2	173.0	[0..1]	[115..1]
gi\|69380 - pir\|\|GMPGCP cholecystokinin precursor - pig CCKN_PIG - Cholecystokinin OS=Sus scrofa GN=CCK PE=1 SV=1	171.0	[0..1]	[115..1]
CCKN_MACFA - Cholecystokinin OS=Macaca fascicularis GN=CCK PE=1 SV=1	169.0	[0..1]	[115..1]
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1	167.0	[0..1]	[115..1]
CCKN_LITCT - Cholecystokinin OS=Lithobates catesbeiana GN=CCK PE=1 SV=2	164.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCGVCLCVV MAVLAAGALA QPVVPVEAVD PMEQRAEEAP RRQLRAVLRP DSEPRARLGA  60
   61 LLARYIQQVR KAPSGRMSVL KNLQGLDPSH RISDRDYMGW MDFGRRSAED YEYPS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.508638
Match:	PF00918.8
Description:	No description for PF00918.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.310	N/A	N/A	a.24.3	Cytochromes
View	Download	0.270	N/A	N/A	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.270	N/A	N/A	a.71.1	Endoplasmic reticulum protein ERP29, C-domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits