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View Structure Prediction Details

Protein: LYSC1_RAT
Organism: Rattus norvegicus
Length: 148 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYSC1_RAT.

Description E-value Query
Range		 Subject
Range
LYSC_ERYPA - Lysozyme C OS=Erythrocebus patas GN=LYZ PE=3 SV=1
LYSC_CHLAE - Lysozyme C OS=Chlorocebus aethiops GN=LYZ PE=2 SV=1
 238.0 [0..1] [148..1]
LYSC_MACMU - Lysozyme C OS=Macaca mulatta GN=LYZ PE=2 SV=1
 235.0 [0..1] [148..1]
LYSC_PAPAN - Lysozyme C OS=Papio anubis GN=LYZ PE=1 SV=1
LYSC_CERAT - Lysozyme C OS=Cercocebus atys GN=LYZ PE=2 SV=1
 235.0 [0..1] [148..1]
LYSC_ALLNI - Lysozyme C OS=Allenopithecus nigroviridis GN=LYZ PE=3 SV=1
 234.0 [0..1] [148..1]
LYSC_COLAN - Lysozyme C OS=Colobus angolensis GN=LYZ PE=3 SV=1
LYSC_COLGU - Lysozyme C OS=Colobus guereza GN=LYZ PE=2 SV=1
 233.0 [0..1] [148..1]
LYSC_NASLA - Lysozyme C OS=Nasalis larvatus GN=LYZ PE=3 SV=1
 233.0 [0..1] [148..1]
LYSC_MIOTA - Lysozyme C OS=Miopithecus talapoin GN=LYZ PE=3 SV=1
 233.0 [0..1] [148..1]
LYSC_HYLLA - Lysozyme C OS=Hylobates lar GN=LYZ PE=2 SV=1
 233.0 [0..1] [148..1]
LYSC_PONPY - Lysozyme C OS=Pongo pygmaeus GN=LYZ PE=2 SV=1
 232.0 [0..1] [148..1]
LYSC_TRAOB - Lysozyme C OS=Trachypithecus obscurus GN=LYZ PE=2 SV=1
LYSC_TRAFR - Lysozyme C OS=Trachypithecus francoisi GN=LYZ PE=2 SV=1
 232.0 [0..1] [148..1]

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Predicted Domain #1
Region A:
Residues: [1-148] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALLVLGFL LLSASVQAKI YERCQFARTL KRNGMSGYYG VSLADWVCLA QHESNYNTQA  60
   61 RNYNPGDQST DYGIFQINSR YWCNDGKTPR AKNACGIPCS ALLQDDITQA IQCAKRVVRD 120
  121 PQGIRAWVAW QRHCKNRDLS GYIRNCGV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 1ivmA
Description: Lysozyme
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle