YRC Public Data Repository - Protein Structure Prediction

Protein:	SYUB_RAT
Organism:	Rattus norvegicus
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYUB_RAT.

Description	E-value	Query Range	Subject Range
gi\|90959531 - gi\|90959531\|dbj\|BAE92618.1\| PvLEA3 protein [Polypedilum vanderplanki]	118.0	[0..2]	[136..160]
gi\|55846688 - gi\|55846688\|gb\|AAV67348.1\| synuclein beta [Macaca fascicularis]	112.0	[0..1]	[132..1]
UBC3_MIMIV - Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R521 PE=3 ...	106.0	[0..2]	[129..439]
gi\|23619599, gi\|... - gi\|23619599\|ref\|NP_705561.1\| hypothetical protein [Plasmodium falciparum 3D7], gi\|23615806\|emb\|CAD52...	104.0	[0..5]	[120..906]
gi\|285435, gi\|14... - pir\|\|B43959 synuclein, form 2 - rat, gi\|149037058\|gb\|EDL91619.1\| synuclein, alpha, isoform CRA_b [R... gi\|241081 - gi\|241081\|gb\|AAB20689.1\| synuclein SYN2 [Rattus sp.]	104.0	[0..1]	[97..1]
gi\|148223263, gi... - gi\|54648558\|gb\|AAH84970.1\| LOC495448 protein [Xenopus laevis], gi\|148223263\|ref\|NP_001088570.1\| hypo...	104.0	[0..1]	[134..1]
gi\|114595166 - gi\|114595166\|ref\|XP_001162370.1\| PREDICTED: alpha-synuclein isoform 4 [Pan troglodytes]	102.0	[0..1]	[134..1]
gi\|85118928 - gi\|85118928\|ref\|XP_965543.1\| hypothetical protein NCU01912 [Neurospora crassa OR74A] gi\|32417248, gi\|... - gi\|32417248\|ref\|XP_329102.1\| hypothetical protein [Neurospora crassa], gi\|28927353\|gb\|EAA36307.1\| hy...	102.0	[0..2]	[135..999]
SNCB - synuclein, beta CCDS4406.1_1 - null gi\|109079846, gi... - gi\|109079850\|ref\|XP_001085615.1\| PREDICTED: synuclein, beta isoform 5 [Macaca mulatta], gi\|109079848... ENSCJAT00000014323 - null gi\|60655929, gi\|... - gi\|60655929\|gb\|AAX32528.1\| synuclein beta [synthetic construct], gi\|208967554\|dbj\|BAG73791.1\| synucl...	99.0	[0..1]	[121..1]

Back

Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFMKGLSM AKEGVVAAAE KTKQGVTEAA EKTKEGVLYV GSKTKEGVVQ GVASVAEKTK  60
   61 EQASHLGGAV FSGAGNIAAA TGLVKKEEFP TDLKPEEVAQ EAAEEPLIEP LMEPEGESYE 120
  121 DSPQEEYQEY EPEAKGP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits