YRC Public Data Repository - Protein Structure Prediction

Protein:	RM23_RAT
Organism:	Rattus norvegicus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM23_RAT.

Description	E-value	Query Range	Subject Range
gi\|24116279 - gi\|24116279\|gb\|AAH38626.1\| Mitochondrial ribosomal protein L23 [Mus musculus]	170.0	[0..1]	[146..1]
MRPL23 - mitochondrial ribosomal protein L23	161.0	[0..1]	[146..1]
gi\|114635613 - gi\|114635613\|ref\|XP_508219.2\| PREDICTED: similar to ribosomal protein L23-related product [Pan trogl...	158.0	[0..1]	[146..31]
gi\|109104973 - gi\|109104973\|ref\|XP_001092196.1\| PREDICTED: similar to mitochondrial ribosomal protein L23 [Macaca m...	157.0	[0..1]	[146..1]
gi\|76626440, gi\|... - gi\|76626440\|ref\|XP_585659.2\| PREDICTED: similar to mitochondrial ribosomal protein L23 [Bos taurus],...	156.0	[0..1]	[146..1]
gi\|77748165, gi\|... - gi\|77748165\|gb\|AAI06552.1\| MGC131313 protein [Xenopus laevis], gi\|147907184\|ref\|NP_001089781.1\| hypo...	144.0	[0..1]	[146..1]
gi\|73983520 - gi\|73983520\|ref\|XP_540784.2\| PREDICTED: similar to Mitochondrial 39S ribosomal protein L23 (L23mt) (...	140.0	[0..1]	[146..43]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNVLYPLY QLGGPQLRVF RTNFFIQLVR PGTAQPEDTV QFRIPMEMTR VDLRNYLEQI  60
   61 YNVPVAAVRT RVQHGSNRRR DHKNVRIKKP DYKVAYVQLA HGQTFTFPDL FPEKEPTSPD 120
  121 PLEEELPQQR QSSDPRCPGI PSWFGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1nkwR
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.49719655437057	bayes_pls_golite062009
structural molecule activity	8.91971353502188	bayes_pls_golite062009
RNA binding	2.08123706428867	bayes_pls_golite062009
nucleic acid binding	1.05505904516672	bayes_pls_golite062009
binding	0.810197411226908	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: