YRC Public Data Repository - Protein Structure Prediction

Protein:	CALC_RAT
Organism:	Rattus norvegicus
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALC_RAT.

Description	E-value	Query Range	Subject Range
CALC_HORSE - Calcitonin OS=Equus caballus GN=CALCA PE=2 SV=1	203.0	[0..1]	[135..1]
gi\|185135463, gi... - gi\|28415625\|dbj\|BAC57418.1\| salmon calcitonin-IV precursor [Oncorhynchus mykiss], gi\|185135463\|ref\|N...	198.0	[0..1]	[135..1]
gi\|109107241 - gi\|109107241\|ref\|XP_001088995.1\| PREDICTED: similar to Calcitonin precursor [Macaca mulatta]	198.0	[0..1]	[133..193]
CALC_CHICK - Calcitonin OS=Gallus gallus GN=CALCA PE=1 SV=2	196.0	[0..1]	[136..1]
gi\|179827 - gi\|179827\|gb\|AAA51913.1\| preprocalcitonin	193.0	[0..1]	[133..1]
CALC_MOUSE - Calcitonin OS=Mus musculus GN=Calca PE=2 SV=1	191.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLKFSPFL VVSILLLYQA CGLQAVPLRS TLESSPGMAT LSEEEARLLA ALVQNYMQMK  60
   61 VRELEQEEEQ EAEGSSLDSP RSKRCGNLST CMLGTYTQDL NKFHTFPQTS IGVGAPGKKR 120
  121 DMAKDLETNH HPYFGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits