YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149039244
Organism:	Rattus norvegicus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149039244.

Description	E-value	Query Range	Subject Range
MED22_RAT - Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus GN=Med22 PE=2 SV=1	211.0	[0..1]	[126..1]
MED22_BOVIN - Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1	210.0	[0..1]	[126..1]
MED22_MOUSE - Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus GN=Med22 PE=1 SV=2	210.0	[0..1]	[126..1]
gi\|31652218, gi\|... - gi\|5803183\|ref\|NP_006743.1\| surfeit 5 isoform a [Homo sapiens], gi\|55958178\|emb\|CAI12828.1\| surfeit ... gi\|60822577 - gi\|60822577\|gb\|AAX36614.1\| surfeit 5 [synthetic construct]	210.0	[0..1]	[140..1]
ENSCJAT00000035050 - null gi\|109109904 - gi\|109109904\|ref\|XP_001101486.1\| PREDICTED: similar to Surfeit locus protein 5 isoform 2 [Macaca mul... gi\|55632551 - gi\|55632551\|ref\|XP_528453.1\| PREDICTED: similar to SURF-5 protein [Pan troglodytes]	209.0	[0..1]	[140..1]
gi\|114627378 - gi\|114627378\|ref\|XP_528453.2\| PREDICTED: surfeit 5 [Pan troglodytes]	209.0	[0..1]	[126..1]
gi\|73967578 - gi\|73967578\|ref\|XP_537799.2\| PREDICTED: similar to Surfeit locus protein 5 isoform 1 [Canis familiar...	208.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQRALPQS KETLLQSYNK RLKDDIKSIM DNFTEIIKTA KIEDETQVSR ATQGEQDNYE  60
   61 MHVRAANIVR AGESLMKLVS DLKQFLILND FPSVNEAIDQ RNQQLRALQE ECDRKLITLR 120
  121 DEVSIDLYEL EEEYYSSRYK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	89.0
Match:	PF06179.3
Description:	No description for PF06179.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits