YRC Public Data Repository - Protein Structure Prediction

Protein:	MGP_RAT
Organism:	Rattus norvegicus
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MGP_RAT.

Description	E-value	Query Range	Subject Range
gi\|73997604 - gi\|73997604\|ref\|XP_853755.1\| PREDICTED: similar to Matrix Gla-protein precursor (MGP) [Canis familia...	135.0	[0..19]	[103..95]
gi\|47496663 - gi\|47496663\|emb\|CAG29354.1\| MGP [Homo sapiens]	133.0	[0..1]	[103..1]
gi\|60653493, gi\|... - gi\|60653493\|gb\|AAX29440.1\| matrix Gla protein [synthetic construct], gi\|30584775\|gb\|AAP36640.1\| Homo...	132.0	[0..1]	[103..1]
gi\|114643789 - gi\|114643789\|ref\|XP_520764.2\| PREDICTED: hypothetical protein [Pan troglodytes]	130.0	[0..1]	[103..1]
gi\|17390789 - gi\|17390789\|gb\|AAH18338.1\| Mgp protein [Mus musculus]	129.0	[0..12]	[103..1]
MGP_PIG - Matrix Gla protein OS=Sus scrofa GN=MGP PE=3 SV=1	127.0	[0..19]	[103..19]
MGP_PONPY - Matrix Gla protein precursor - Pongo pygmaeus (Orangutan) MGP_PONAB - Matrix Gla protein OS=Pongo abelii GN=MGP PE=3 SV=1	126.0	[0..17]	[103..17]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLLPLAIL AALAVAALCY ESHESMESYE VSPFTTRRNA NTFISPQQRW HAKAQERVRE  60
   61 LNKPAQEINR EACDDYKLCE RYALIYGYNA AYNRYFRQRR GAK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits