YRC Public Data Repository - Protein Structure Prediction

Protein:	NPY_RAT
Organism:	Rattus norvegicus
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPY_RAT.

Description	E-value	Query Range	Subject Range
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1	160.0	[0..2]	[98..1]
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1	159.0	[0..2]	[98..1]
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	158.0	[0..2]	[98..1]
PYYA_DANRE - Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1	157.0	[0..2]	[98..1]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1	157.0	[0..2]	[98..1]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2	156.0	[0..2]	[98..1]
gi\|49473436 - gi\|49473436\|gb\|AAT66407.1\| neuropeptide Y [Ambystoma mexicanum]	156.0	[0..1]	[98..1]
gi\|73976504 - gi\|73976504\|ref\|XP_532492.2\| PREDICTED: similar to Neuropeptide Y precursor [Canis familiaris]	153.0	[0..2]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLGNKRMGL CGLTLALSLL VCLGILAEGY PSKPDNPGED APAEDMARYY SALRHYINLI  60
   61 TRQRYGKRSS PETLISDLLM RESTENAPRT RLEDPSMW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits