YRC Public Data Repository - Protein Structure Prediction

Protein:	CYC2_RAT
Organism:	Rattus norvegicus
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC2_RAT.

Description	E-value	Query Range	Subject Range
CYC2_XENLA - Cytochrome c, testis-specific OS=Xenopus laevis GN=cyct PE=3 SV=3	147.0	[0..1]	[105..1]
gi\|89272026 - gi\|89272026\|emb\|CAJ83237.1\| cytochrome c, somatic [Xenopus tropicalis]	147.0	[0..1]	[104..8]
CYC_DANRE - Cytochrome c OS=Danio rerio GN=cyc PE=3 SV=3	146.0	[0..1]	[104..1]
gi\|229351 - gi\|229351\|prf\|\|711086A cytochrome c	146.0	[0..2]	[104..1]
CYC_SCHGR - (P00040) Cytochrome c	145.0	[0..2]	[103..5]
CYC_CYPCA - (P00026) Cytochrome c iso-1/iso-2	145.0	[0..2]	[104..1]
CYC2_MOUSE - Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3	145.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDAEAGKKI FIQKCAQCHT VEKGGKHKTG PNLWGLFGRK TGQAPGFSYT DANKNKGVIW  60
   61 TEETLMEYLE NPKKYIPGTK MIFAGIKKKS EREDLIQYLK EATSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	2aiuA
Description:	No description for 2aiuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits