YRC Public Data Repository - Protein Structure Prediction

Protein:	TKNK_RAT
Organism:	Rattus norvegicus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TKNK_RAT.

Description	E-value	Query Range	Subject Range
gi\|2137658, gi\|6... - gi\|6678209\|ref\|NP_033338.1\| tachykinin 2 [Mus musculus], gi\|449860\|prf\|\|1920220B prepro-tachykinin B...	210.0	[0..1]	[116..1]
TKNK_BOVIN - Tachykinin-3 OS=Bos taurus GN=TAC3 PE=3 SV=1	202.0	[0..1]	[116..1]
gi\|48146503 - gi\|48146503\|emb\|CAG33474.1\| TAC3 [Homo sapiens]	200.0	[0..1]	[116..1]
gi\|114644192 - gi\|114644192\|ref\|XP_001168338.1\| PREDICTED: tachykinin 3 [Pan troglodytes]	197.0	[0..1]	[116..1]
gi\|55741789 - ref\|NP_001007197.1\| tachykinin 3 [Sus scrofa] TKNK_PIG - Neurokinin-B OS=Sus scrofa GN=TAC3 PE=1 SV=2	194.0	[0..1]	[116..1]
gi\|73968444 - gi\|73968444\|ref\|XP_849031.1\| PREDICTED: similar to tachykinin 2 [Canis familiaris]	190.0	[0..1]	[116..1]
gi\|109097348 - gi\|109097348\|ref\|XP_001115535.1\| PREDICTED: tachykinin 3 (neuromedin K, neurokinin beta) [Macaca mul...	188.0	[0..1]	[116..1]
gi\|24817670 - gi\|24817670\|emb\|CAD45185.1\| preprotachykinin B [Ovis aries]	180.0	[0..8]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSAMLFAAV LALSLAWTFG AACEEPQEQG GRLSKDSDLS LLPPPLLRRL YDSRSISLEG  60
   61 LLKVLSKASV GPKETSLPQK RDMHDFFVGL MGKRNSQPDT PADVVEENTP SFGVLK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.69897
Match:	PF03823.5
Description:	No description for PF03823.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits