YRC Public Data Repository - Protein Structure Prediction

Protein:	VA0E1_RAT
Organism:	Rattus norvegicus
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VA0E1_RAT.

Description	E-value	Query Range	Subject Range
gi\|109068818 - gi\|109068818\|ref\|XP_001096894.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit isoform 1...	125.0	[0..1]	[74..31]
gi\|114616687 - gi\|114616687\|ref\|XP_519473.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	125.0	[0..1]	[74..31]
gi\|119600427, gi... - gi\|21758361\|dbj\|BAC05292.1\| unnamed protein product [Homo sapiens], gi\|119600427\|gb\|EAW80021.1\| ATPa...	124.0	[0..1]	[74..31]
gi\|58384490, gi\|... - gi\|58384490\|ref\|XP_313344.2\| ENSANGP00000011861 [Anopheles gambiae str. PEST], gi\|55241061\|gb\|EAA088...	124.0	[0..7]	[80..46]
gi\|73978959 - gi\|73978959\|ref\|XP_539905.2\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit [Canis famili...	119.0	[0..1]	[80..31]
gi\|94468560 - gi\|94468560\|gb\|ABF18129.1\| vacuolar ATPase M9 [Aedes aegypti]	117.0	[0..7]	[80..5]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYHGLTVPL IVMSVFWGFV GLLVPWFIPK GPNRGVIITM LVTCSVCCYL FWLIAILAQL  60
   61 NPLFGPQLKN ETIWYLKYHW P

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.744727
Match:	PF05493.4
Description:	No description for PF05493.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits