YRC Public Data Repository - Protein Structure Prediction

Protein:	COX8B_RAT
Organism:	Rattus norvegicus
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX8B_RAT.

Description	E-value	Query Range	Subject Range
gi\|87196494, gi\|... - gi\|87196494\|ref\|NP_776449.2\| cytochrome c oxidase subunit VIIIa [Bos taurus], gi\|79157002\|gb\|AAI0817...	109.0	[0..5]	[67..6]
COX8A_OTOCR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Otolemur crassicaudatus GN=COX8A PE=3 SV=1	108.0	[0..5]	[67..6]
COX8A_NYCCO - Cytochrome c oxidase subunit 8A, mitochondrial OS=Nycticebus coucang GN=COX8A PE=3 SV=1	106.0	[0..5]	[67..6]
COX8A_RAT - Cytochrome c oxidase subunit 8A, mitochondrial OS=Rattus norvegicus GN=Cox8a PE=1 SV=3	105.0	[0..1]	[67..1]
COX8A_TARSY - Cytochrome c oxidase subunit 8A, mitochondrial OS=Tarsius syrichta GN=COX8A PE=3 SV=1	105.0	[0..5]	[67..6]
COX8A_EULFU - Cytochrome c oxidase subunit 8A, mitochondrial OS=Eulemur fulvus fulvus GN=COX8A PE=3 SV=1 gi\|30409796 - gi\|30409796\|gb\|AAP32256.1\| cytochrome c oxidase subunit VIII liver form [Eulemur fulvus]	105.0	[0..5]	[67..6]
COX8A_MOUSE - Cytochrome c oxidase subunit 8A, mitochondrial OS=Mus musculus GN=Cox8a PE=3 SV=1	105.0	[0..5]	[67..6]
gi\|73983764 - gi\|73983764\|ref\|XP_533249.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver, mito...	104.0	[0..4]	[67..5]
COX8B_ATEBE - Cytochrome c oxidase subunit 8B, mitochondrial OS=Ateles belzebuth GN=COX8B PE=3 SV=1	101.0	[0..1]	[70..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLPPILRL LQAPEKYTVI PKARISSKPA KSPTSAMDQA VGMSVIIAGF MVPAGWVLSH  60
   61 LESYKRSSAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits