YRC Public Data Repository - Protein Structure Prediction

Protein:	MCSP_RAT
Organism:	Rattus norvegicus
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MCSP_RAT.

Description	E-value	Query Range	Subject Range
gi\|46228363 - gi\|46228363\|gb\|EAK89262.1\| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ... gi\|66359288 - gi\|66359288\|ref\|XP_626822.1\| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...	204.0	[0..5]	[144..1683]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	202.0	[0..5]	[144..1676]
gi\|73955449 - gi\|73955449\|ref\|XP_858007.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	189.0	[0..5]	[143..1707]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	188.0	[0..2]	[121..1417]
gi\|134089267, gi... - gi\|50257749\|gb\|EAL20450.1\| hypothetical protein CNBE3710 [Cryptococcus neoformans var. neoformans B-... gi\|58267574, gi\|... - gi\|58267574\|ref\|XP_570943.1\| DNA-directed RNA polymerase ii largest subunit [Cryptococcus neoformans...	186.0	[0..7]	[140..1594]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	182.0	[0..5]	[143..1507]
gi\|7494259 - pir\|\|T18492 hypothetical protein C0805w - malaria parasite (Plasmodium falciparum) gi\|124505021, gi... - gi\|3758846\|emb\|CAB11131.1\| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7], gi\|...	181.0	[0..2]	[134..2264]
gi\|76635636 - gi\|76635636\|ref\|XP_881215.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	180.0	[0..11]	[140..1694]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSKTNQC CPTPCCPPKP CCPPKPCCLQ KSPCCPKSPC CPPKSPCCTP KVCPCPTPCP  60
   61 CPATCPAACA CPCPMKPCCP TKCTCCPKKC TCCPQPTCCV QPTCCSSENK TESDSDGSGQ 120
  121 TQDRGAQTQQ SPQGGQGNWN QKKTK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.66
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits