YRC Public Data Repository - Protein Structure Prediction

Protein:	VAMP3_RAT
Organism:	Rattus norvegicus
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAMP3_RAT.

Description	E-value	Query Range	Subject Range
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	133.0	[0..13]	[99..128]
gi\|29840934 - gi\|29840934\|gb\|AAP05935.1\| SJCHGC01984 protein [Schistosoma japonicum]	120.0	[0..2]	[102..8]
gi\|50752072 - gi\|50752072\|ref\|XP_422640.1\| PREDICTED: similar to vesicle associated membrane protein VAMP-2 [Gallu...	119.0	[0..2]	[92..13]
gi\|55276718 - gi\|55276718\|gb\|AAV49990.1\| putative synaptobrevin/VAMP [Hordeum vulgare subsp. vulgare]	118.0	[0..13]	[99..120]
SYB_TETCF - Synaptobrevin OS=Tetronarce californica PE=2 SV=1	118.0	[0..5]	[86..22]
gi\|68357982 - gi\|68357982\|ref\|XP_692479.1\| PREDICTED: similar to Vesicle-associated membrane protein 1 (VAMP-1) (S...	117.0	[0..13]	[103..72]
gi\|2660907, gi\|1... - gi\|2660907\|gb\|AAB88137.1\| synaptobrevin [Xenopus laevis], gi\|148235941\|ref\|NP_001080943.1\| vesicle-a...	115.0	[0..8]	[103..19]
VA726_ARATH - Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2	115.0	[0..10]	[88..122]
gi\|39952077, gi\|... - gi\|39952077\|ref\|XP_363755.1\| hypothetical protein MG01681.4 [Magnaporthe grisea 70-15], gb\|EAA56030....	115.0	[0..7]	[101..133]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGVPSGSS AATGSNRRLQ QTQNQVDEVV DIMRVNVDKV LERDQKLSEL DDRADALQAG  60
   61 ASQFETSAAK LKRKYWWKNC KMWAIGISVL VIIVIIIIVW CVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1sfcA
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits