YRC Public Data Repository - Protein Structure Prediction

Protein:	NEU1_RAT
Organism:	Rattus norvegicus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NEU1_RAT.

Description	E-value	Query Range	Subject Range
NEU2_BOVIN - Vasopressin-neurophysin 2-copeptin OS=Bos taurus GN=AVP PE=1 SV=1	191.0	[0..1]	[125..1]
gi\|112180687 - gi\|112180687\|gb\|AAH18062.1\| AVP protein [Homo sapiens]	189.0	[0..1]	[119..1]
gi\|625270 - pir\|\|NVPG2 vasopressin / neurophysin 2 precursor - pig NEU2_PIG - Vasopressin-neurophysin 2-copeptin OS=Sus scrofa GN=AVP PE=1 SV=2	188.0	[0..1]	[125..1]
gi\|82749744 - gi\|82749744\|gb\|ABB89756.1\| arginine vasopressin [Microtus ochrogaster]	186.0	[0..1]	[119..5]
NEU2_RAT - Vasopressin-neurophysin 2-copeptin OS=Rattus norvegicus GN=Avp PE=1 SV=1	184.0	[0..1]	[119..5]
NEU2_MOUSE - Vasopressin-neurophysin 2-copeptin OS=Mus musculus GN=Avp PE=2 SV=1	183.0	[0..1]	[119..5]
gi\|109092704 - gi\|109092704\|ref\|XP_001115061.1\| PREDICTED: arginine vasopressin (neurophysin II, antidiuretic hormo...	183.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACPSLACCL LGLLALTSAC YIQNCPLGGK RAALDLDMRK CLPCGPGGKG RCFGPSICCA  60
   61 DELGCFVGTA EALRCQEENY LPSPCQSGQK PCGSGGRCAT AGICCSPDGC RTDPACDPES 120
  121 AFSER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1npoA
Description:	Neurophysin II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits