YRC Public Data Repository - Protein Structure Prediction

Protein:	SYUA_RAT
Organism:	Rattus norvegicus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYUA_RAT.

Description	E-value	Query Range	Subject Range
SYUA_SAGLB - Alpha-synuclein OS=Saguinus labiatus GN=SNCA PE=3 SV=1	153.0	[0..1]	[140..1]
gi\|109074999 - gi\|109074999\|ref\|XP_001095402.1\| PREDICTED: similar to alpha-synuclein isoform NACP140 [Macaca mulat...	150.0	[0..32]	[140..141]
gi\|30584369, gi\|... - gi\|60654049\|gb\|AAX29717.1\| synuclein alpha [synthetic construct], gi\|60654047\|gb\|AAX29716.1\| synucle...	150.0	[0..1]	[140..1]
SYUA_MACFA - Alpha-synuclein OS=Macaca fascicularis GN=SNCA PE=3 SV=1 SYUA_MACMU - Alpha-synuclein OS=Macaca mulatta GN=SNCA PE=3 SV=1	149.0	[0..1]	[140..1]
SYUA_ERYPA - Alpha-synuclein OS=Erythrocebus patas GN=SNCA PE=3 SV=1 CCDS3634.1_1 - null	148.0	[0..1]	[140..1]
SYUA_GORGO - Alpha-synuclein OS=Gorilla gorilla gorilla GN=SNCA PE=3 SV=1 SNCA - synuclein, alpha (non A4 component of amyloid precursor) gi\|36065813 - gi\|36065813\|gb\|AAQ85072.1\| alpha-synuclein [Gorilla gorilla] gi\|157928420, gi... - gi\|208967552\|dbj\|BAG73790.1\| synuclein, alpha [synthetic construct], gi\|157928420\|gb\|ABW03506.1\| syn... SYUA_PANPA - Alpha-synuclein OS=Pan paniscus GN=SNCA PE=3 SV=1 SYUA_PANTR - Alpha-synuclein OS=Pan troglodytes GN=SNCA PE=3 SV=1	147.0	[0..1]	[140..1]
SYUA_MOUSE - Alpha-synuclein OS=Mus musculus GN=Snca PE=1 SV=2	147.0	[0..1]	[140..1]
SYUA_ATEGE - Alpha-synuclein OS=Ateles geoffroyi GN=SNCA PE=3 SV=1 SYUA_LAGLA - Alpha-synuclein OS=Lagothrix lagotricha GN=SNCA PE=3 SV=1	147.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFMKGLSK AKEGVVAAAE KTKQGVAEAA GKTKEGVLYV GSKTKEGVVH GVTTVAEKTK  60
   61 EQVTNVGGAV VTGVTAVAQK TVEGAGNIAA ATGFVKKDQM GKGEEGYPQE GILEDMPVDP 120
  121 SSEAYEMPSE EGYQDYEPEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.09691
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits