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View Structure Prediction Details

Protein: SYUA_RAT
Organism: Rattus norvegicus
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYUA_RAT.

Description E-value Query
Range
Subject
Range
SYUA_SAGLB - Alpha-synuclein OS=Saguinus labiatus GN=SNCA PE=3 SV=1
153.0 [0..1] [140..1]
gi|109074999 - gi|109074999|ref|XP_001095402.1| PREDICTED: similar to alpha-synuclein isoform NACP140 [Macaca mulat...
150.0 [0..32] [140..141]
gi|30584369, gi|... - gi|60654049|gb|AAX29717.1| synuclein alpha [synthetic construct], gi|60654047|gb|AAX29716.1| synucle...
150.0 [0..1] [140..1]
SYUA_MACFA - Alpha-synuclein OS=Macaca fascicularis GN=SNCA PE=3 SV=1
SYUA_MACMU - Alpha-synuclein OS=Macaca mulatta GN=SNCA PE=3 SV=1
149.0 [0..1] [140..1]
SYUA_ERYPA - Alpha-synuclein OS=Erythrocebus patas GN=SNCA PE=3 SV=1
CCDS3634.1_1 - null
148.0 [0..1] [140..1]
SYUA_GORGO - Alpha-synuclein OS=Gorilla gorilla gorilla GN=SNCA PE=3 SV=1
SNCA - synuclein, alpha (non A4 component of amyloid precursor)
gi|36065813 - gi|36065813|gb|AAQ85072.1| alpha-synuclein [Gorilla gorilla]
gi|157928420, gi... - gi|208967552|dbj|BAG73790.1| synuclein, alpha [synthetic construct], gi|157928420|gb|ABW03506.1| syn...
SYUA_PANPA - Alpha-synuclein OS=Pan paniscus GN=SNCA PE=3 SV=1
SYUA_PANTR - Alpha-synuclein OS=Pan troglodytes GN=SNCA PE=3 SV=1
147.0 [0..1] [140..1]
SYUA_MOUSE - Alpha-synuclein OS=Mus musculus GN=Snca PE=1 SV=2
147.0 [0..1] [140..1]
SYUA_ATEGE - Alpha-synuclein OS=Ateles geoffroyi GN=SNCA PE=3 SV=1
SYUA_LAGLA - Alpha-synuclein OS=Lagothrix lagotricha GN=SNCA PE=3 SV=1
147.0 [0..1] [140..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFMKGLSK AKEGVVAAAE KTKQGVAEAA GKTKEGVLYV GSKTKEGVVH GVTTVAEKTK  60
   61 EQVTNVGGAV VTGVTAVAQK TVEGAGNIAA ATGFVKKDQM GKGEEGYPQE GILEDMPVDP 120
  121 SSEAYEMPSE EGYQDYEPEA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.09691
Match: 1xq8A
Description: Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle