YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM8B_RAT
Organism:	Rattus norvegicus
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM8B_RAT.

Description	E-value	Query Range	Subject Range
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	110.0	[0..1]	[83..166]
gi\|32411199, gi\|... - gi\|32411199\|ref\|XP_326080.1\| hypothetical protein [Neurospora crassa], gi\|28924727\|gb\|EAA33840.1\| hy... gi\|85109764 - gi\|85109764\|ref\|XP_963076.1\| hypothetical protein [Neurospora crassa OR74A]	96.0	[0..1]	[83..615]
gi\|109123504 - gi\|109123504\|ref\|XP_001107083.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog B ...	96.0	[0..1]	[83..1]
TIM8B_BOVIN - Mitochondrial import inner membrane translocase subunit Tim8 B OS=Bos taurus GN=TIMM8B PE=3 SV=1	96.0	[0..1]	[83..1]
gi\|114640332 - gi\|114640332\|ref\|XP_001146364.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog B ... TIMM8B - translocase of inner mitochondrial membrane 8 homolog B (yeast) ENSCJAT00000021390 - null	96.0	[0..1]	[83..1]
gi\|47226185 - gi\|47226185\|emb\|CAG08332.1\| unnamed protein product [Tetraodon nigroviridis]	93.0	[0..1]	[82..1]
gi\|114690216 - gi\|114690216\|ref\|XP_001134944.1\| PREDICTED: similar to small zinc finger-like protein [Pan troglodyt...	93.0	[0..2]	[83..35]
gi\|39969151, gi\|... - gi\|39969151\|ref\|XP_365966.1\| hypothetical protein MG10186.4 [Magnaporthe grisea 70-15], gb\|EAA57511....	92.0	[0..2]	[74..331]
TI8AB_MOUSE - Putative mitochondrial import inner membrane translocase subunit Tim8 A-B OS=Mus musculus GN=Timm8a2...	92.0	[0..3]	[81..11]

Back

Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELGEADEA ELQRLVAAEQ QKAQFTAQVH HFMELCWDKC VEKPGSRLDS RTENCLSSCV  60
   61 DRFIDTTLAI TGRFAQIVQK GGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.39794
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits