YRC Public Data Repository - Protein Structure Prediction

Protein:	DLX1_RAT
Organism:	Rattus norvegicus
Length:	44 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DLX1_RAT.

Description	E-value	Query Range	Subject Range
gi\|56385105 - gi\|56385105\|gb\|AAV85983.1\| Dlx1 [Triakis semifasciata]	67.0	[0..1]	[34..184]
DLX1A_DANRE - Homeobox protein Dlx1a OS=Danio rerio GN=dlx1a PE=2 SV=1	66.0	[0..1]	[34..185]
gi\|47218082 - gi\|47218082\|emb\|CAG09954.1\| unnamed protein product [Tetraodon nigroviridis]	65.0	[0..1]	[36..184]
gi\|76609655 - gi\|76609655\|ref\|XP_882257.1\| PREDICTED: similar to Homeobox protein DLX-1 isoform 4 [Bos taurus]	62.0	[0..1]	[33..184]
DLX1 - distal-less homeobox 1	62.0	[0..1]	[33..185]
gi\|49245974, gi\|... - gi\|49245974\|gb\|AAT58227.1\| homeodomain transcription factor DLX1 [Gallus gallus], gi\|114326267\|ref\|N...	62.0	[0..1]	[34..185]
gi\|9837437 - gi\|9837437\|gb\|AAG00574.1\|AF288040_1 DLX1 [Oryzias latipes]	61.0	[0..1]	[35..10]
gi\|74004596 - gi\|74004596\|ref\|XP_860791.1\| PREDICTED: similar to Homeobox protein DLX-1 isoform 3 [Canis familiari...	61.0	[0..1]	[33..184]

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Predicted Domain #1

Region A:
Residues: [1-44]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLMKQGGAAL EGSALANGRA LSAGSPPVPP GWNRIPPLGR AQEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits