YRC Public Data Repository - Protein Structure Prediction

Protein:	DLRB1_RAT
Organism:	Rattus norvegicus
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DLRB1_RAT.

Description	E-value	Query Range	Subject Range
gi\|56203991, gi\|... - gi\|56204931\|emb\|CAI23309.1\| dynein, light chain, roadblock-type 1 [Homo sapiens], gi\|56203991\|emb\|CA...	177.0	[0..2]	[96..54]
gi\|50753873 - gi\|50753873\|ref\|XP_414162.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B; dynein, cyto...	171.0	[0..2]	[96..67]
gi\|109129304 - gi\|109129304\|ref\|XP_001111256.1\| PREDICTED: similar to dynein, cytoplasmic, light polypeptide 2B iso...	170.0	[0..2]	[96..31]
gi\|73949669 - gi\|73949669\|ref\|XP_850570.1\| PREDICTED: similar to dynein, cytoplasmic, light chain 2A [Canis famili...	167.0	[0..1]	[96..15]
DLRB2_MOUSE - Dynein light chain roadblock-type 2 OS=Mus musculus GN=Dynlrb2 PE=1 SV=1 gi\|149038273, gi... - gi\|62665323\|ref\|XP_341695.2\| PREDICTED: similar to dynein, cytoplasmic, light chain 2B [Rattus norve...	163.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVEETLKR LQSQKGVQGI IVVNTEGIPI KSTMDNPTTT QYANLMHNFI LKARSTVREI  60
   61 DPQNDLTFLR IRSKKNEIMV APDKDYFLIV IQNPTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.09691
Match:	2hz5A
Description:	No description for 2hz5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits