YRC Public Data Repository - Protein Structure Prediction

Protein:	MTR1L_RAT
Organism:	Rattus norvegicus
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTR1L_RAT.

Description	E-value	Query Range	Subject Range
gi\|10121075, gi\|... - gi\|10121076\|pdb\|1F88\|B Chain B, Crystal Structure Of Bovine Rhodopsin, gi\|10121075\|pdb\|1F88\|A Chain ...	122.0	[0..1]	[119..136]
gi\|16588405 - gi\|16588405\|gb\|AAL26791.1\|AF310191_1 inferred ancient archosaur visual pigment [synthetic construct]	122.0	[0..1]	[119..136]
gi\|7542455, gi\|1... - gi\|7542455\|gb\|AAF63461.1\|AF222329_1 rhodopsin; RH1 [Taeniopygia guttata], gi\|115529258\|ref\|NP_001070...	120.0	[0..1]	[119..136]
gi\|6682967, gi\|7... - gi\|71051305\|gb\|AAH98524.1\| Extra-ocular rhodopsin [Danio rerio], gi\|6682967\|dbj\|BAA88958.1\| exo-rhod...	120.0	[0..1]	[119..136]
OPSD_SMICR - Rhodopsin OS=Sminthopsis crassicaudata GN=RHO PE=2 SV=2	120.0	[0..1]	[119..136]
OPSD_OTOCR - Rhodopsin OS=Otolemur crassicaudatus GN=RHO PE=2 SV=1	120.0	[0..1]	[119..136]
gi\|14041792 - gi\|14041792\|dbj\|BAB55452.1\| visual pigment [Cynops pyrrhogaster]	120.0	[0..1]	[119..136]

Back

Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YCYICHSLQY NADLQPANTC IYLVVTWVMT VLDVLPNVYI GTIEYDPRTY TCYFNYVNNP  60
   61 AFTVTIVCIH FVLPLIIVGY CYTKIWIKVL ADRDPAGQNP DNQFAEVRNF LTMFVIFLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits