YRC Public Data Repository - Protein Structure Prediction

Protein:	CORT_RAT
Organism:	Rattus norvegicus
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CORT_RAT.

Description	E-value	Query Range	Subject Range
gi\|162317772, gi... - gi\|162318340\|gb\|AAI57010.1\| Cortistatin [synthetic construct], gi\|162317772\|gb\|AAI56238.1\| Cortistat... CORT_MOUSE - Cortistatin OS=Mus musculus GN=Cort PE=2 SV=1	131.0	[0..1]	[112..2]
gi\|55233184 - gi\|55233184\|gb\|AAV48555.1\| preprosomatostatin-II [Chitala chitala]	128.0	[0..13]	[111..11]
gi\|53778339 - gi\|53778339\|gb\|AAU93566.1\| preprosomatostatin II [Epinephelus coioides]	122.0	[0..11]	[111..7]
HGNC:11329\|MIM:1... - null gi\|61354883, gi\|... - gi\|61354883\|gb\|AAX41072.1\| somatostatin [synthetic construct], gi\|60812789\|gb\|AAX36231.1\| somatostat... SST - somatostatin SMS_MACFA - Somatostatin OS=Macaca fascicularis GN=SST PE=3 SV=1	120.0	[0..12]	[111..11]
gi\|60824818, gi\|... - gi\|61365073\|gb\|AAX42649.1\| somatostatin [synthetic construct], gi\|60824818\|gb\|AAX36695.1\| somatostat...	120.0	[0..12]	[111..11]
gi\|55233186 - gi\|55233186\|gb\|AAV48556.1\| preprosomatostatin-II [Gnathonemus pertersii] gi\|55233186 - gi\|55233186\|gb\|AAV48556.1\| preprosomatostatin-II [Gnathonemus pertersii]	119.0	[0..22]	[111..20]
gi\|109052804 - gi\|109052804\|ref\|XP_001103516.1\| PREDICTED: similar to somatostatin preproprotein [Macaca mulatta] gi\|149731202 - gi\|149731202\|ref\|XP_001499743.1\| PREDICTED: similar to preprosomatostatin [Equus caballus] gi\|73697560, gi\|... - gi\|73697560\|gb\|AAZ81422.1\| somatostatin [Bos taurus], gi\|73586769\|gb\|AAI03254.1\| SST protein [Bos ta... SMS_SHEEP - Somatostatin OS=Ovis aries GN=SST PE=3 SV=1 SMS_PIG - Somatostatin OS=Sus scrofa GN=SST PE=1 SV=3 CCDS3288.1_1 - null gi\|55621730 - gi\|55621730\|ref\|XP_526419.1\| PREDICTED: similar to preprosomatostatin [Pan troglodytes]	116.0	[0..12]	[111..11]
SMS_CANLF - Somatostatin OS=Canis lupus familiaris GN=SST PE=3 SV=1	115.0	[0..12]	[111..11]
SMS_BOVIN - Somatostatin OS=Bos taurus GN=SST PE=3 SV=1	115.0	[0..12]	[111..11]

Back

Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGCSTRGKR PSALSLLLLL LLSGIAASAL PLESGPTGQD SVQDATGGRR TGLLTFLAWW  60
   61 HEWASQDSSS TAFEGGTPEL SKRQERPPLQ QPPHRDKKPC KNFFWKTFSS CK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits