YRC Public Data Repository - Protein Structure Prediction

Protein:	DYLT1_RAT
Organism:	Rattus norvegicus
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DYLT1_RAT.

Description	E-value	Query Range	Subject Range
gi\|7512072, gi\|3... - pir\|\|JC6573 outer-arm dynein light chain 3 - sea urchin (Anthocidaris crassispina), gi\|3336986\|dbj\|... gi\|115951344, gi... - gi\|72009103\|ref\|XP_783725.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|115...	165.0	[0..1]	[113..1]
gi\|123984375, gi... - gi\|123998343\|gb\|ABM86773.1\| dynein, light chain, Tctex-type 1 [synthetic construct], gi\|123998341\|gb... DYLT1_BOVIN - Dynein light chain Tctex-type 1 OS=Bos taurus GN=DYNLT1 PE=1 SV=1 ENSCJAT00000007120 - null gi\|73946187 - gi\|73946187\|ref\|XP_855031.1\| PREDICTED: similar to Cytoplasmic dynein light chain (T-complex testis-... DYNLT1 - dynein, light chain, Tctex-type 1 gi\|55627652, gi\|... - gi\|55627652\|ref\|XP_518829.1\| PREDICTED: t-complex-associated-testis-expressed 1-like 1 isoform 3 [Pa...	164.0	[0..1]	[113..1]
gi\|50730129 - gi\|50730129\|ref\|XP_416782.1\| PREDICTED: similar to T-complex associated-testis-expressed 1-like (Pro...	163.0	[0..1]	[113..196]
gi\|62901866 - gi\|62901866\|gb\|AAY18884.1\| TCTE1-like [synthetic construct]	162.0	[0..2]	[113..26]
gi\|58332706, gi\|... - gi\|58332706\|ref\|NP_001011428.1\| dynein, light chain, Tctex-type 1 [Xenopus (Silurana) tropicalis], g... gi\|284521647\|ref... - dynein, light chain, Tctex-type 1 [Xenopus laevis], dynein, light chain, Tctex-type 1 [Xenopus laevi...	162.0	[0..1]	[113..1]
gi\|3789929 - gi\|3789929\|gb\|AAC67546.1\| dynein molecular motor protein light chain [Torpedo californica]	160.0	[0..1]	[113..1]
gi\|51980442 - gb\|AAH82157.1\| Unknown (protein for MGC:98454) [Xenopus laevis] DYLT1_MOUSE - Dynein light chain Tctex-type 1 OS=Mus musculus GN=Dynlt1 PE=1 SV=1	160.0	[0..1]	[113..1]
gi\|113195655, gi... - gi\|84453003\|dbj\|BAE71139.1\| Tctex1-related dynein light chain [Ciona intestinalis], gi\|113195655\|ref...	159.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDFQASEET AFVVDEVSNI VKEAIESAIG GNAYQHSKVN QWTTNVVEQT LSQLTKLGKP  60
   61 FKYIVTCVIM QKNGAGLHTA SSCFWDSSTD GSCTVRWENK TMYCIVSAFG LSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	1xdxA
Description:	Solution Structure of the Tctex1 Light Chain From Chlamydomonas Inner Dynein Arm I1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits