YRC Public Data Repository - Protein Structure Prediction

Protein:	RS23_RAT
Organism:	Rattus norvegicus
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS23_RAT.

Description	E-value	Query Range	Subject Range
gi\|50761979 - gi\|50761979\|ref\|XP_424903.1\| PREDICTED: similar to ribosomal protein S23 [Gallus gallus]	215.0	[0..1]	[143..106]
gi\|72679974 - gi\|72679974\|gb\|AAI00604.1\| Ribosomal protein S23 [Mus musculus]	208.0	[0..1]	[143..1]
gi\|109500599, gi... - gi\|62660444\|ref\|XP_573594.1\| PREDICTED: similar to ribosomal protein S23 [Rattus norvegicus], gi\|109...	207.0	[0..1]	[143..1]
gi\|58332846, gi\|... - gi\|89272439\|emb\|CAJ82645.1\| ribosomal protein S23 [Xenopus tropicalis], gi\|58332846\|ref\|NP_001011499...	207.0	[0..1]	[143..1]
gi\|115968471, gi... - gi\|115968471\|ref\|XP_001182865.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue [Strong...	207.0	[0..2]	[143..18]
gi\|124300831 - gi\|124300831\|dbj\|BAF45911.1\| ribosomal protein S23 [Solea senegalensis] gi\|225706108 - gi\|225706108\|gb\|ACO08900.1\| 40S ribosomal protein S23 [Osmerus mordax] gi\|237507230 - gi\|237507230\|gb\|ACQ99325.1\| 40S ribosomal protein S23 [Perca flavescens] gi\|48526116 - gi\|48526116\|gb\|AAT45256.1\| 40S ribosomal protein S24-like protein [Sparus aurata] gi\|158534025, gi... - gi\|213626139\|gb\|AAI71653.1\| Zgc:171710 [Danio rerio], gi\|213624832\|gb\|AAI71649.1\| Zgc:171710 [Danio ...	207.0	[0..1]	[143..1]
gi\|119903572, gi... - gi\|76673100\|ref\|XP_869860.1\| PREDICTED: similar to yeast ribosomal protein S28 homologue isoform 1 [...	207.0	[0..1]	[143..1]
RS23_PIG - 40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=1 SV=3	207.0	[0..1]	[143..1]
RS23_ICTPU - 40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1	206.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKCRGLRTA RKLRSHRRDQ KWHDKQYKKA HLGTALKANP FGGASHAKGI VLEKVGVEAK  60
   61 QPNSAIRKCV RVQLIKNGKK ITAFVPNDGC LNFIEENDEV LVAGFGRKGH AVGDIPGVRF 120
  121 KVVKVANVSL LALYKGKKER PRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1s1hL
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits